Detailed information NTG1008140

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: AAN986_RS05755
• Genome accession: NZ_CP157763
• Coordinates: 1278921..1279814 (-)
• Length: 297 a.a.
• NCBI ID: WP_016445609.1
• Uniprot ID: A0A1H3L211
• Organism: Delftia sp. DS1230
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1273921..1284814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAN986_RS05725	argJ	1274247..1275479 (+)	1233	WP_017405522.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
AAN986_RS05730	-	1275645..1276601 (+)	957	WP_047217092.1	ATP-binding protein	-
AAN986_RS05735	-	1276652..1277158 (+)	507	WP_016445605.1	NUDIX domain-containing protein	-
AAN986_RS05740	-	1277169..1277405 (-)	237	WP_223275109.1	DNA gyrase inhibitor YacG	-
AAN986_RS05745	zapD	1277423..1278178 (-)	756	WP_016445607.1	cell division protein ZapD	-
AAN986_RS05750	coaE	1278268..1278906 (-)	639	WP_016445608.1	dephospho-CoA kinase	-
AAN986_RS05755	pilD	1278921..1279814 (-)	894	WP_016445609.1	A24 family peptidase	Machinery gene
AAN986_RS05760	pilC	1279814..1281031 (-)	1218	WP_016445610.1	type II secretion system F family protein	Machinery gene
AAN986_RS05765	pilB	1281070..1282812 (-)	1743	WP_034364744.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AAN986_RS05775	-	1283049..1283978 (-)	930	WP_043789750.1	polyprenyl synthetase family protein	-
AAN986_RS05780	rplU	1284209..1284520 (+)	312	WP_012207284.1	50S ribosomal protein L21	-
AAN986_RS05785	rpmA	1284536..1284793 (+)	258	WP_012207283.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 31842.37 Da
• Isoelectric Point: 6.9135

>NTDB_id=1008140 AAN986_RS05755 WP_016445609.1 1278921..1279814(-) (pilD) [Delftia sp. DS1230]
MVLELWMQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSSSSATPSPATAPPPAEAPLSLSRPRSRCPH
CGHAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCAAQWGITPTGAAWCLFSAALLSLALIDWDTTL
LPDDITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPII
LISSVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAALGL

Nucleotide

• Length: 894 bp

>NTDB_id=1008140 AAN986_RS05755 WP_016445609.1 1278921..1279814(-) (pilD) [Delftia sp. DS1230]
ATGGTTTTGGAACTCTGGATGCAGGCTGCATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
GCATAGGCTGCCCCGCATGATGGAGCAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAAGAGCAATCTTCATCCTCCG
CCACGCCATCGCCCGCCACAGCGCCGCCGCCTGCCGAGGCGCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCAT
TGCGGCCATGCCATCCACTGGTACGAGAATATTCCCGTGCTCAGTTATCTGGCGCTGCGAGGCCGGTGCTCCGAATGCAA
GGCGTCGATCAGCATCCGCTATCCGCTGGTGGAATTGGCCTGCGCCGCGCTGTTTGCCTACTGTGCGGCGCAATGGGGCA
TCACGCCCACAGGCGCTGCCTGGTGCCTTTTCAGTGCGGCCTTGCTGAGCCTGGCATTGATCGACTGGGACACCACACTG
CTTCCCGACGACATCACCCTGCCCTTGCTGTGGGCCGGACTGCTGTCGTCGGCGCTGCACTGGACCGCCGTGCCTCTGGC
CGACGCGGTATGGGGCGCTGCAGCGGGCTATCTCTCGCTGTGGCTGGTTTACTGGGCCTTCAAGCTGGCCACCGGCAAGG
AAGGCATGGGCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCACTCGTGCCCATCATC
CTGATCTCGTCGGTGATTGGCGCCATCGTGGGCATCGCGTTGAAGATCAACAGCCGCCTGCGTGAGGGCGGCTATGTTCC
CTTCGGCCCCTTTCTGGCGGGCGCCGGCTTTGCAGCCATGGTGTTCGGACCGCAGCAGATGCTGCAATCCCTATTGGCGG
CCTTGGGCCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-131)

• Type IV leader peptidase family (Peptidase_A24) (143-252)

3D structure

• AlphaFold DB: A0A1H3L211

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.59	95.286	0.492
pilD	Vibrio campbellii strain DS40M4	46.416	98.653	0.458
pilD	Acinetobacter nosocomialis M2	44.364	92.593	0.411
pilD	Neisseria gonorrhoeae MS11	45.865	89.562	0.411
pilD	Acinetobacter baumannii D1279779	44	92.593	0.407