Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   Q9L42_RS06730 Genome accession   NZ_CP157743
Coordinates   1378946..1380169 (-) Length   407 a.a.
NCBI ID   WP_349432396.1    Uniprot ID   A0AAU7NY21
Organism   Methylomarinum sp. Ch1-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1373946..1385169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q9L42_RS06700 (Q9L42_006700) - 1374821..1375792 (+) 972 WP_349432393.1 Nudix family hydrolase -
  Q9L42_RS06705 (Q9L42_006705) trxC 1375789..1376223 (-) 435 WP_305910268.1 thioredoxin TrxC -
  Q9L42_RS06710 (Q9L42_006710) yacG 1376308..1376511 (-) 204 WP_349432395.1 DNA gyrase inhibitor YacG -
  Q9L42_RS06715 (Q9L42_006715) zapD 1376511..1377281 (-) 771 WP_305909199.1 cell division protein ZapD -
  Q9L42_RS06720 (Q9L42_006720) coaE 1377426..1378016 (-) 591 WP_305909198.1 dephospho-CoA kinase -
  Q9L42_RS06725 (Q9L42_006725) pilD 1378022..1378894 (-) 873 WP_305909197.1 A24 family peptidase Machinery gene
  Q9L42_RS06730 (Q9L42_006730) pilC 1378946..1380169 (-) 1224 WP_349432396.1 type II secretion system F family protein Machinery gene
  Q9L42_RS06735 (Q9L42_006735) pilB 1380172..1381884 (-) 1713 WP_305909196.1 type IV-A pilus assembly ATPase PilB Machinery gene
  Q9L42_RS06740 (Q9L42_006740) - 1382027..1382821 (-) 795 WP_305909195.1 response regulator -
  Q9L42_RS06745 (Q9L42_006745) - 1382824..1384278 (-) 1455 WP_305909194.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45047.02 Da        Isoelectric Point: 6.8864

>NTDB_id=1008104 Q9L42_RS06730 WP_349432396.1 1378946..1380169(-) (pilC) [Methylomarinum sp. Ch1-1]
MAEKKEEQIDFIWEGIDKQRNKTKGEISAKSETIARTDLRRMGVRVIKIKPKPKPLFGAKVQKITPADIAVFARQLATML
EAGVPLVQSFDIIGKGHENASMSEMLLSIKTDIEGGDTLAQALRKKNLYFDDLFCNLVEAGEQAGVLETLLDKIATYKEK
TESLKKKIKKAMTYPIAVLVVAFIVTAILLIFVVPVFEDLFQSFGADLPSFTKFVIGLSEWAQQWWWAVLGVIGVTIYVF
GYFKKRSRPFNQFLDRTLLRLPVVGMILHKSAIARFARTLSTMSAAGVPLVEALESVAGATGNIIYHDAVMKMREDVSTG
QQLQFSMSQVNLFPHMVIQMVAIGEESGSIDAMLDKVADFYEEEVDNLVDNLSSLMEPIIMAILGILVGGLIVAMYLPIF
KLGAAVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=1008104 Q9L42_RS06730 WP_349432396.1 1378946..1380169(-) (pilC) [Methylomarinum sp. Ch1-1]
ATGGCAGAAAAGAAAGAAGAACAGATCGACTTCATCTGGGAAGGCATCGATAAACAGCGCAATAAAACCAAGGGCGAAAT
CAGCGCCAAGAGCGAGACGATCGCCAGAACCGACCTGAGACGCATGGGGGTTCGCGTCATCAAAATCAAGCCCAAGCCCA
AGCCGTTGTTTGGCGCCAAGGTGCAAAAAATCACGCCGGCCGATATCGCCGTATTCGCCCGTCAATTGGCCACGATGCTG
GAAGCCGGCGTGCCACTGGTGCAGTCCTTCGACATCATCGGTAAAGGTCATGAAAACGCCAGCATGTCGGAAATGTTGTT
GTCGATCAAGACCGATATCGAGGGCGGCGACACCCTGGCCCAGGCTTTGCGTAAAAAAAACCTGTACTTCGACGATTTGT
TCTGCAATCTGGTCGAGGCCGGCGAACAGGCCGGGGTGTTGGAAACGTTGCTGGACAAGATTGCCACCTACAAGGAAAAA
ACCGAATCGCTGAAGAAAAAAATCAAAAAGGCCATGACCTATCCGATCGCCGTGCTGGTGGTCGCTTTCATCGTCACGGC
GATATTGTTGATTTTCGTGGTGCCGGTATTCGAGGATTTATTCCAGAGTTTTGGCGCCGATCTGCCGTCATTCACAAAAT
TCGTCATCGGCTTATCGGAATGGGCCCAGCAATGGTGGTGGGCGGTGCTCGGCGTCATCGGCGTCACCATTTATGTGTTC
GGTTATTTCAAGAAGCGTTCCCGCCCCTTCAATCAATTTCTCGACCGCACGCTGCTGAGACTCCCCGTCGTCGGCATGAT
TCTGCACAAGTCGGCAATCGCTCGTTTTGCCCGTACATTGTCGACGATGTCGGCCGCCGGCGTGCCGCTGGTCGAGGCGC
TGGAATCGGTGGCCGGCGCCACCGGCAACATTATTTATCATGACGCGGTGATGAAGATGCGCGAGGATGTCTCGACCGGC
CAGCAGCTGCAGTTTTCCATGTCACAGGTCAATTTGTTTCCACATATGGTCATACAGATGGTTGCGATCGGCGAGGAGTC
GGGCTCGATAGACGCCATGCTCGACAAGGTGGCGGACTTCTATGAAGAGGAAGTCGACAATCTGGTCGACAACTTGAGCA
GCCTGATGGAACCGATTATCATGGCTATCTTGGGGATTCTGGTCGGCGGCCTGATTGTCGCGATGTATCTACCGATCTTC
AAGCTCGGTGCAGCGGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

61.809

97.789

0.604
  pilC Pseudomonas stutzeri DSM 10701

58.477

100

0.585
  pilC Acinetobacter baumannii D1279779

57.598

100

0.577
  pilC Acinetobacter baylyi ADP1

56.618

100

0.568
  pilG Neisseria gonorrhoeae MS11

46.929

100

0.469
  pilG Neisseria meningitidis 44/76-A

46.929

100

0.469
  pilC Vibrio campbellii strain DS40M4

39.85

98.034

0.391
  pilC Vibrio cholerae strain A1552

39.95

97.789

0.391
  pilC Thermus thermophilus HB27

37.157

98.526

0.366

Multiple sequence alignment