Detailed information NTG1008103

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: Q9L42_RS06725
• Genome accession: NZ_CP157743
• Coordinates: 1378022..1378894 (-)
• Length: 290 a.a.
• NCBI ID: WP_305909197.1
• Uniprot ID: A0AAU7NXQ2
• Organism: Methylomarinum sp. Ch1-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1373022..1383894

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Q9L42_RS06695 (Q9L42_006695)	argJ	1373626..1374840 (+)	1215	WP_305909202.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
Q9L42_RS06700 (Q9L42_006700)	-	1374821..1375792 (+)	972	WP_349432393.1	Nudix family hydrolase	-
Q9L42_RS06705 (Q9L42_006705)	trxC	1375789..1376223 (-)	435	WP_305910268.1	thioredoxin TrxC	-
Q9L42_RS06710 (Q9L42_006710)	yacG	1376308..1376511 (-)	204	WP_349432395.1	DNA gyrase inhibitor YacG	-
Q9L42_RS06715 (Q9L42_006715)	zapD	1376511..1377281 (-)	771	WP_305909199.1	cell division protein ZapD	-
Q9L42_RS06720 (Q9L42_006720)	coaE	1377426..1378016 (-)	591	WP_305909198.1	dephospho-CoA kinase	-
Q9L42_RS06725 (Q9L42_006725)	pilD	1378022..1378894 (-)	873	WP_305909197.1	A24 family peptidase	Machinery gene
Q9L42_RS06730 (Q9L42_006730)	pilC	1378946..1380169 (-)	1224	WP_349432396.1	type II secretion system F family protein	Machinery gene
Q9L42_RS06735 (Q9L42_006735)	pilB	1380172..1381884 (-)	1713	WP_305909196.1	type IV-A pilus assembly ATPase PilB	Machinery gene
Q9L42_RS06740 (Q9L42_006740)	-	1382027..1382821 (-)	795	WP_305909195.1	response regulator	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32577.71 Da
• Isoelectric Point: 5.6340

>NTDB_id=1008103 Q9L42_RS06725 WP_305909197.1 1378022..1378894(-) (pilD) [Methylomarinum sp. Ch1-1]
MQLLLDTLQHSLTLLTAVIFVLGLMIGSFLNVVIFRLPVMMTRDWRRECREFLELEEEPQAERFNLLVPLSRCPHCQTDI
KPYQNIPVFSYLFLQGKCAQCGSAISPRYPLIEAFTGICSAIVAWHFGYGAEMLFALLLTWCLIAASFIDIDHQLLPDSI
TLPMLWLGLFLSLFSVYTDPQSSIIGAIAGYLSLWTIYQLFKLLTGKEGMGYGDFKLLALFGAWLGWQYLPLIVLLSSLV
GSVIGIAMVILVKKDRNTPIPFGPYLAAAGWLALIWGDEINRLYLNTIGL

Nucleotide

• Length: 873 bp

>NTDB_id=1008103 Q9L42_RS06725 WP_305909197.1 1378022..1378894(-) (pilD) [Methylomarinum sp. Ch1-1]
ATGCAATTATTACTCGATACCCTGCAACATTCCTTGACCTTGTTAACGGCCGTCATTTTTGTGCTCGGCCTGATGATCGG
CAGCTTCTTGAATGTCGTGATCTTCCGCCTGCCGGTGATGATGACCCGGGACTGGCGGCGGGAATGTCGGGAATTTCTGG
AATTGGAGGAAGAACCGCAAGCGGAAAGGTTCAACCTGCTCGTACCTCTGTCGCGTTGCCCACACTGCCAAACCGACATC
AAGCCTTATCAAAATATCCCGGTCTTCAGCTATCTGTTTTTGCAAGGAAAATGTGCGCAATGCGGCAGCGCGATTTCTCC
GCGTTACCCGTTGATCGAGGCTTTCACCGGCATTTGTTCGGCGATTGTCGCCTGGCATTTCGGCTACGGCGCCGAAATGC
TGTTCGCTTTATTGCTGACCTGGTGTTTAATCGCCGCCAGCTTCATCGATATCGATCACCAATTGCTGCCTGATTCGATC
ACCCTACCGATGTTGTGGCTGGGATTGTTTTTAAGCTTGTTTTCGGTTTATACCGACCCCCAATCCAGCATCATCGGCGC
CATTGCCGGTTATTTGAGCCTATGGACGATTTATCAGCTGTTTAAACTGCTGACCGGCAAGGAAGGCATGGGCTATGGCG
ACTTCAAGCTGCTCGCGTTGTTCGGCGCCTGGCTGGGATGGCAATATTTACCGCTGATCGTTCTGTTATCGTCGCTGGTT
GGCAGCGTGATCGGCATCGCGATGGTTATCCTGGTCAAAAAAGACCGTAACACACCGATCCCTTTCGGGCCCTACCTGGC
CGCCGCCGGCTGGCTGGCGCTGATCTGGGGGGACGAGATCAACCGCCTCTATCTGAATACCATCGGCTTATAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	53.125	99.31	0.528
pilD	Acinetobacter nosocomialis M2	52.083	99.31	0.517
pilD	Vibrio campbellii strain DS40M4	52.098	98.621	0.514
pilD	Vibrio cholerae strain A1552	54.275	92.759	0.503
pilD	Neisseria gonorrhoeae MS11	49.81	90.69	0.452