Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABLV49_RS17205 Genome accession   NZ_CP157675
Coordinates   3565930..3567147 (-) Length   405 a.a.
NCBI ID   WP_349278346.1    Uniprot ID   A0AAU7LRQ3
Organism   Polaromonas hydrogenivorans strain DSM 17735     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3560930..3572147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLV49_RS17170 (ABLV49_17170) prmC 3561678..3562571 (+) 894 WP_349278338.1 peptide chain release factor N(5)-glutamine methyltransferase -
  ABLV49_RS17175 (ABLV49_17175) grxD 3562685..3563014 (+) 330 WP_011800187.1 Grx4 family monothiol glutaredoxin -
  ABLV49_RS17180 (ABLV49_17180) - 3563054..3563314 (-) 261 WP_349278339.1 hypothetical protein -
  ABLV49_RS17185 (ABLV49_17185) - 3563388..3563594 (-) 207 WP_349278340.1 DNA gyrase inhibitor YacG -
  ABLV49_RS17190 (ABLV49_17190) zapD 3563653..3564408 (-) 756 WP_349278342.1 cell division protein ZapD -
  ABLV49_RS17195 (ABLV49_17195) coaE 3564448..3565059 (-) 612 WP_349278344.1 dephospho-CoA kinase -
  ABLV49_RS17200 (ABLV49_17200) pilD 3565064..3565915 (-) 852 WP_349281762.1 A24 family peptidase Machinery gene
  ABLV49_RS17205 (ABLV49_17205) pilC 3565930..3567147 (-) 1218 WP_349278346.1 type II secretion system F family protein Machinery gene
  ABLV49_RS17210 (ABLV49_17210) pilB 3567233..3568969 (-) 1737 WP_349278348.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABLV49_RS17215 (ABLV49_17215) - 3569196..3569510 (-) 315 WP_349278350.1 hypothetical protein -
  ABLV49_RS17220 (ABLV49_17220) gspG 3569669..3570118 (+) 450 WP_041376506.1 type II secretion system major pseudopilin GspG -
  ABLV49_RS17225 (ABLV49_17225) - 3570246..3570659 (+) 414 WP_349278352.1 type II secretion system protein GspH -
  ABLV49_RS17230 (ABLV49_17230) gspI 3570659..3571036 (+) 378 WP_349278354.1 type II secretion system minor pseudopilin GspI -
  ABLV49_RS17235 (ABLV49_17235) - 3571039..3571758 (+) 720 WP_349278356.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44015.79 Da        Isoelectric Point: 9.6232

>NTDB_id=1008054 ABLV49_RS17205 WP_349278346.1 3565930..3567147(-) (pilC) [Polaromonas hydrogenivorans strain DSM 17735]
MATAASKGIKEFVFEWEGKDRGGKQVRGEIRASGENQVKVSLRRQGVLASKIKKRRMRSGKAIKPRDIAIFTRQLATMMK
AGVPLLQSFDIVGRGNPNGSVTKLLNDVRTDVETGTSLSGAFRKYPMYFNALYCNLVEAGEAAGILESLLDRLAIYMEKT
EAIKSKIKSALMYPASVVVVAFVVVAVIMIFVIPAFKEVFSSFGAELPAPTLIVMAISEFFVAYWWLIFGGVGGGIYFFL
QAWKRSEKMQKVMDRLLLKMPVFGSLIEKSVIARWTRTLSTMFAAGVPLVEALDSVGGASGNSLYADATEKIQQEVSTGT
SLTAAMGNANLFPTMVLQMCAIGEESGSVDHMLGKAADFYEAEVDEMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1008054 ABLV49_RS17205 WP_349278346.1 3565930..3567147(-) (pilC) [Polaromonas hydrogenivorans strain DSM 17735]
ATGGCAACCGCAGCATCAAAAGGCATCAAGGAATTTGTTTTCGAATGGGAAGGCAAGGACCGGGGAGGAAAACAGGTTCG
CGGAGAGATTCGCGCTTCTGGTGAAAACCAGGTCAAGGTGTCGCTGCGCCGGCAGGGTGTGCTGGCGAGCAAGATCAAGA
AACGCCGCATGCGCTCGGGCAAGGCCATCAAGCCGCGCGACATCGCCATCTTTACCCGCCAGCTTGCCACCATGATGAAG
GCCGGCGTGCCGCTGCTGCAGTCCTTTGACATCGTGGGCCGGGGCAATCCCAACGGCAGCGTGACCAAGCTGCTGAACGA
TGTACGCACGGATGTGGAAACCGGAACATCGCTCAGCGGTGCTTTCCGCAAATACCCGATGTATTTCAATGCCCTGTACT
GCAACCTGGTCGAAGCGGGCGAAGCTGCCGGTATCCTGGAGTCGCTGCTGGACCGGCTGGCCATCTATATGGAAAAGACC
GAGGCCATCAAGTCAAAGATCAAATCGGCCCTGATGTACCCAGCTTCTGTCGTGGTGGTGGCTTTCGTCGTGGTGGCCGT
GATCATGATTTTCGTGATTCCAGCGTTTAAAGAAGTGTTTTCTTCCTTTGGCGCCGAGTTGCCAGCACCCACGCTCATCG
TGATGGCCATCAGTGAGTTCTTTGTGGCTTACTGGTGGCTGATTTTCGGTGGTGTGGGTGGCGGTATTTATTTTTTCCTG
CAGGCCTGGAAGCGCAGTGAAAAAATGCAGAAAGTCATGGACCGGCTGCTGCTAAAAATGCCTGTGTTCGGCAGCCTGAT
AGAAAAGTCCGTGATCGCCCGCTGGACCCGTACCCTGTCCACCATGTTTGCGGCCGGCGTGCCGCTGGTCGAAGCCCTCG
ACTCGGTGGGCGGCGCTTCGGGAAACTCCCTGTATGCCGATGCCACCGAGAAAATCCAGCAGGAAGTCTCGACCGGCACC
AGCCTGACGGCGGCCATGGGCAATGCCAACCTGTTTCCCACGATGGTGCTGCAGATGTGCGCCATTGGCGAGGAGTCGGG
CTCGGTGGACCACATGCTGGGCAAGGCGGCCGATTTTTATGAAGCCGAAGTCGATGAAATGGTGGCCGGCCTGTCCAGCC
TGATGGAGCCGATCATCATTGTGTTTTTGGGCACCCTGATTGGCGGCATCGTGGTTTCCATGTACCTGCCGATTTTCAAG
CTGGGTCAGGTTGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.96

99.753

0.538
  pilG Neisseria gonorrhoeae MS11

52.75

98.765

0.521
  pilG Neisseria meningitidis 44/76-A

52.5

98.765

0.519
  pilC Legionella pneumophila strain ERS1305867

50.754

98.272

0.499
  pilC Acinetobacter baylyi ADP1

50.251

98.272

0.494
  pilC Acinetobacter baumannii D1279779

49.37

98.025

0.484
  pilC Vibrio cholerae strain A1552

40.657

97.778

0.398
  pilC Vibrio campbellii strain DS40M4

38.462

99.506

0.383
  pilC Thermus thermophilus HB27

37.081

100

0.383

Multiple sequence alignment