Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ABLV49_RS17200 | Genome accession | NZ_CP157675 |
| Coordinates | 3565064..3565915 (-) | Length | 283 a.a. |
| NCBI ID | WP_349281762.1 | Uniprot ID | A0AAU7LXY6 |
| Organism | Polaromonas hydrogenivorans strain DSM 17735 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3560064..3570915
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABLV49_RS17165 (ABLV49_17165) | prfA | 3560460..3561581 (+) | 1122 | WP_349278336.1 | peptide chain release factor 1 | - |
| ABLV49_RS17170 (ABLV49_17170) | prmC | 3561678..3562571 (+) | 894 | WP_349278338.1 | peptide chain release factor N(5)-glutamine methyltransferase | - |
| ABLV49_RS17175 (ABLV49_17175) | grxD | 3562685..3563014 (+) | 330 | WP_011800187.1 | Grx4 family monothiol glutaredoxin | - |
| ABLV49_RS17180 (ABLV49_17180) | - | 3563054..3563314 (-) | 261 | WP_349278339.1 | hypothetical protein | - |
| ABLV49_RS17185 (ABLV49_17185) | - | 3563388..3563594 (-) | 207 | WP_349278340.1 | DNA gyrase inhibitor YacG | - |
| ABLV49_RS17190 (ABLV49_17190) | zapD | 3563653..3564408 (-) | 756 | WP_349278342.1 | cell division protein ZapD | - |
| ABLV49_RS17195 (ABLV49_17195) | coaE | 3564448..3565059 (-) | 612 | WP_349278344.1 | dephospho-CoA kinase | - |
| ABLV49_RS17200 (ABLV49_17200) | pilD | 3565064..3565915 (-) | 852 | WP_349281762.1 | A24 family peptidase | Machinery gene |
| ABLV49_RS17205 (ABLV49_17205) | pilC | 3565930..3567147 (-) | 1218 | WP_349278346.1 | type II secretion system F family protein | Machinery gene |
| ABLV49_RS17210 (ABLV49_17210) | pilB | 3567233..3568969 (-) | 1737 | WP_349278348.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABLV49_RS17215 (ABLV49_17215) | - | 3569196..3569510 (-) | 315 | WP_349278350.1 | hypothetical protein | - |
| ABLV49_RS17220 (ABLV49_17220) | gspG | 3569669..3570118 (+) | 450 | WP_041376506.1 | type II secretion system major pseudopilin GspG | - |
| ABLV49_RS17225 (ABLV49_17225) | - | 3570246..3570659 (+) | 414 | WP_349278352.1 | type II secretion system protein GspH | - |
Sequence
Protein
Download Length: 283 a.a. Molecular weight: 30920.65 Da Isoelectric Point: 5.8926
>NTDB_id=1008053 ABLV49_RS17200 WP_349281762.1 3565064..3565915(-) (pilD) [Polaromonas hydrogenivorans strain DSM 17735]
MELGLWPELVAVLAGILGLLIGSFLNVVIYRVPKIMERQWAEECAELTGAPAEPAEKFNLLIPRSRCSSCGHLIRWYENI
PVFSYLFLRGKCSACGAPYGVRYPLVEAVTGSLFFFCAWRWGWTPTTLVWCGFSAMLLALAMIDWDTTLLPDDMTFPLLW
TGLIAAALQWNPAVSLSAALWGAVAGYLSLWLVYWAFKLATGKDGMGYGDFKLFAALGAWFGWPALVPMILMASVIGAVI
GIVMKFSSGLREGGYVPFGPFLAGAGFTAMIFGPQSILQFVGL
MELGLWPELVAVLAGILGLLIGSFLNVVIYRVPKIMERQWAEECAELTGAPAEPAEKFNLLIPRSRCSSCGHLIRWYENI
PVFSYLFLRGKCSACGAPYGVRYPLVEAVTGSLFFFCAWRWGWTPTTLVWCGFSAMLLALAMIDWDTTLLPDDMTFPLLW
TGLIAAALQWNPAVSLSAALWGAVAGYLSLWLVYWAFKLATGKDGMGYGDFKLFAALGAWFGWPALVPMILMASVIGAVI
GIVMKFSSGLREGGYVPFGPFLAGAGFTAMIFGPQSILQFVGL
Nucleotide
Download Length: 852 bp
>NTDB_id=1008053 ABLV49_RS17200 WP_349281762.1 3565064..3565915(-) (pilD) [Polaromonas hydrogenivorans strain DSM 17735]
ATGGAGTTAGGCCTGTGGCCGGAGCTTGTTGCCGTGCTCGCCGGGATTTTGGGTCTGCTGATCGGCAGTTTCCTGAACGT
CGTCATCTACCGTGTTCCAAAAATAATGGAGCGCCAGTGGGCGGAGGAATGTGCTGAACTGACGGGTGCACCAGCGGAGC
CGGCTGAAAAATTCAACCTGCTGATACCACGTTCGCGGTGTTCCAGTTGCGGCCACCTGATTCGCTGGTATGAAAACATT
CCGGTGTTCAGCTACCTTTTCCTGCGGGGAAAGTGTTCGGCATGCGGCGCGCCCTACGGGGTTCGTTATCCGCTGGTTGA
AGCGGTCACGGGCAGCCTGTTTTTCTTTTGCGCCTGGCGCTGGGGCTGGACGCCGACGACGCTGGTCTGGTGCGGATTTT
CCGCGATGCTGCTGGCGCTGGCAATGATTGACTGGGACACCACCCTGCTGCCCGACGACATGACCTTTCCCTTGCTGTGG
ACGGGGCTGATTGCGGCGGCATTGCAGTGGAACCCGGCGGTCAGTTTGTCCGCAGCTTTATGGGGTGCGGTGGCCGGCTA
TCTTTCCCTGTGGCTGGTTTACTGGGCTTTCAAGCTGGCAACCGGCAAGGATGGCATGGGCTACGGCGACTTCAAGCTCT
TTGCCGCGCTGGGTGCCTGGTTTGGCTGGCCTGCGCTGGTGCCCATGATCCTGATGGCTTCGGTGATCGGCGCCGTCATC
GGCATCGTGATGAAGTTTTCCAGCGGCCTGCGCGAAGGCGGCTATGTGCCGTTTGGCCCCTTTTTGGCCGGGGCAGGTTT
TACCGCCATGATTTTCGGTCCGCAGTCGATCCTTCAATTTGTCGGGTTATAA
ATGGAGTTAGGCCTGTGGCCGGAGCTTGTTGCCGTGCTCGCCGGGATTTTGGGTCTGCTGATCGGCAGTTTCCTGAACGT
CGTCATCTACCGTGTTCCAAAAATAATGGAGCGCCAGTGGGCGGAGGAATGTGCTGAACTGACGGGTGCACCAGCGGAGC
CGGCTGAAAAATTCAACCTGCTGATACCACGTTCGCGGTGTTCCAGTTGCGGCCACCTGATTCGCTGGTATGAAAACATT
CCGGTGTTCAGCTACCTTTTCCTGCGGGGAAAGTGTTCGGCATGCGGCGCGCCCTACGGGGTTCGTTATCCGCTGGTTGA
AGCGGTCACGGGCAGCCTGTTTTTCTTTTGCGCCTGGCGCTGGGGCTGGACGCCGACGACGCTGGTCTGGTGCGGATTTT
CCGCGATGCTGCTGGCGCTGGCAATGATTGACTGGGACACCACCCTGCTGCCCGACGACATGACCTTTCCCTTGCTGTGG
ACGGGGCTGATTGCGGCGGCATTGCAGTGGAACCCGGCGGTCAGTTTGTCCGCAGCTTTATGGGGTGCGGTGGCCGGCTA
TCTTTCCCTGTGGCTGGTTTACTGGGCTTTCAAGCTGGCAACCGGCAAGGATGGCATGGGCTACGGCGACTTCAAGCTCT
TTGCCGCGCTGGGTGCCTGGTTTGGCTGGCCTGCGCTGGTGCCCATGATCCTGATGGCTTCGGTGATCGGCGCCGTCATC
GGCATCGTGATGAAGTTTTCCAGCGGCCTGCGCGAAGGCGGCTATGTGCCGTTTGGCCCCTTTTTGGCCGGGGCAGGTTT
TACCGCCATGATTTTCGGTCCGCAGTCGATCCTTCAATTTGTCGGGTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
50.916 |
96.466 |
0.491 |
| pilD | Vibrio cholerae strain A1552 |
49.275 |
97.527 |
0.481 |
| pilD | Neisseria gonorrhoeae MS11 |
49.434 |
93.64 |
0.463 |
| pilD | Acinetobacter baumannii D1279779 |
44.565 |
97.527 |
0.435 |
| pilD | Acinetobacter nosocomialis M2 |
44.203 |
97.527 |
0.431 |