Detailed information NTG1007733

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: ABL847_RS27230
• Genome accession: NZ_CP157616
• Coordinates: 5833092..5834315 (-)
• Length: 407 a.a.
• NCBI ID: WP_077000883.1
• Uniprot ID: -
• Organism: Variovorax sp. KK3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5828092..5839315

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABL847_RS27205 (ABL847_27160)	zapD	5828157..5828912 (-)	756	WP_077000879.1	cell division protein ZapD	-
ABL847_RS27210 (ABL847_27165)	-	5828954..5829970 (-)	1017	WP_077000880.1	HAD family hydrolase	-
ABL847_RS27215 (ABL847_27170)	-	5829981..5831474 (-)	1494	WP_077000881.1	MBOAT family O-acyltransferase	-
ABL847_RS27220 (ABL847_27175)	coaE	5831594..5832172 (-)	579	WP_077000916.1	dephospho-CoA kinase	-
ABL847_RS27225 (ABL847_27180)	pilD	5832187..5833092 (-)	906	WP_077000882.1	prepilin peptidase	Machinery gene
ABL847_RS27230 (ABL847_27185)	pilC	5833092..5834315 (-)	1224	WP_077000883.1	type II secretion system F family protein	Machinery gene
ABL847_RS27235 (ABL847_27190)	pilB	5834331..5836067 (-)	1737	WP_077000884.1	type IV-A pilus assembly ATPase PilB	Machinery gene

Sequence

Protein

• Length: 407 a.a.
• Molecular weight: 44585.39 Da
• Isoelectric Point: 9.7441

>NTDB_id=1007733 ABL847_RS27230 WP_077000883.1 5833092..5834315(-) (pilC) [Variovorax sp. KK3]
MATAAASRVTHKEFIYEWEGKDRNGKVVRGELRAAGENQVQAALRRQGVLASKIKKRRMRAGKAIKPKDIAIFTRQLATM
MKAGVPLLQAFDIVGRGNANPSVAKLLNDIRSDVETGTSLSAAFRKFPKYFDSLYCNLVEAGEAAGILEELLDRLATYME
KTEAIKSKIKSALMYPTSVVVVAFVVVAIIMIFVIPAFKQVFTSFGADLPAPTLFVMAMSEFFVAYWWLIFGVIGGGLYF
FFQAWKRNEKVQRFMDRLLLRIPIFGKLIDKSCVARWTRTLATMFAAGVPLVEALDSVGGASGNTVYSDATVKIQQEVST
GTSLTTAMTNANLFPSMVLQMTAIGEESGSIDHMLGKAADFYESEVDDMVAGLSSLMEPIIIVFLGVIIGGIVVSMYLPI
FKLGQVV

Nucleotide

• Length: 1224 bp

>NTDB_id=1007733 ABL847_RS27230 WP_077000883.1 5833092..5834315(-) (pilC) [Variovorax sp. KK3]
ATGGCAACGGCAGCAGCATCGCGGGTCACCCACAAGGAATTCATCTACGAGTGGGAAGGCAAGGACCGCAACGGCAAGGT
GGTGCGCGGCGAGCTGCGCGCGGCCGGCGAGAACCAGGTACAGGCGGCGCTGCGTCGCCAGGGCGTGCTGGCCTCCAAGA
TCAAGAAGCGGCGCATGCGCGCCGGCAAGGCGATCAAGCCCAAGGACATCGCCATCTTCACGCGGCAGCTGGCCACCATG
ATGAAGGCCGGCGTCCCGCTGCTGCAGGCGTTCGACATCGTGGGCCGCGGCAACGCCAACCCCAGCGTGGCCAAGCTGCT
CAACGACATCCGCAGCGACGTGGAAACCGGCACCTCGCTGTCGGCTGCCTTCCGCAAGTTTCCCAAGTACTTCGACAGCC
TCTATTGCAACCTGGTCGAGGCCGGCGAGGCCGCCGGTATCCTGGAAGAGCTGCTCGACCGCCTCGCGACTTACATGGAG
AAGACCGAGGCCATCAAGTCGAAGATCAAGTCGGCGCTGATGTACCCCACCTCGGTGGTCGTGGTCGCCTTCGTGGTGGT
GGCGATCATCATGATCTTCGTGATCCCGGCTTTCAAGCAGGTGTTCACCTCCTTCGGTGCCGACCTGCCGGCGCCGACGC
TCTTCGTCATGGCGATGAGCGAATTCTTCGTCGCCTACTGGTGGCTGATCTTCGGCGTGATCGGCGGCGGCCTGTACTTC
TTCTTCCAGGCCTGGAAGCGTAACGAGAAGGTCCAGCGCTTCATGGACCGCCTGCTGCTGCGCATTCCGATCTTCGGCAA
GCTGATCGACAAGTCCTGCGTCGCCCGCTGGACGCGCACCCTGGCCACCATGTTCGCCGCGGGCGTGCCGCTGGTCGAAG
CGCTCGACTCGGTGGGCGGTGCGTCGGGCAACACGGTGTATTCGGACGCCACCGTCAAGATCCAGCAGGAAGTGTCGACC
GGCACCAGCCTGACAACGGCCATGACCAATGCCAACCTGTTCCCCTCGATGGTGCTGCAGATGACGGCCATCGGCGAGGA
ATCGGGCTCCATCGACCACATGCTGGGCAAGGCGGCCGATTTCTACGAGTCCGAGGTCGACGACATGGTCGCCGGTCTTT
CGAGCCTGATGGAGCCGATCATCATCGTGTTCCTGGGCGTCATCATCGGCGGCATCGTGGTCTCGATGTACCTGCCCATC
TTCAAGCTCGGCCAGGTCGTCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (73-196)

• Type II secretion system (T2SS), protein F (T2SSF) (277-399)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	54.135	98.034	0.531
pilG	Neisseria gonorrhoeae MS11	52.393	97.543	0.511
pilG	Neisseria meningitidis 44/76-A	52.141	97.543	0.509
pilC	Acinetobacter baylyi ADP1	50.369	100	0.504
pilC	Legionella pneumophila strain ERS1305867	49.747	97.297	0.484
pilC	Acinetobacter baumannii D1279779	49.37	97.543	0.482
pilC	Vibrio cholerae strain A1552	42	98.28	0.413
pilC	Thermus thermophilus HB27	40.295	100	0.403
pilC	Vibrio campbellii strain DS40M4	39.801	98.771	0.393