Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ABL847_RS27225 Genome accession   NZ_CP157616
Coordinates   5832187..5833092 (-) Length   301 a.a.
NCBI ID   WP_077000882.1    Uniprot ID   -
Organism   Variovorax sp. KK3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5827187..5838092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABL847_RS27195 (ABL847_27150) - 5827509..5827934 (+) 426 WP_077000877.1 NUDIX domain-containing protein -
  ABL847_RS27200 (ABL847_27155) - 5827937..5828149 (-) 213 WP_077000878.1 DNA gyrase inhibitor YacG -
  ABL847_RS27205 (ABL847_27160) zapD 5828157..5828912 (-) 756 WP_077000879.1 cell division protein ZapD -
  ABL847_RS27210 (ABL847_27165) - 5828954..5829970 (-) 1017 WP_077000880.1 HAD family hydrolase -
  ABL847_RS27215 (ABL847_27170) - 5829981..5831474 (-) 1494 WP_077000881.1 MBOAT family O-acyltransferase -
  ABL847_RS27220 (ABL847_27175) coaE 5831594..5832172 (-) 579 WP_077000916.1 dephospho-CoA kinase -
  ABL847_RS27225 (ABL847_27180) pilD 5832187..5833092 (-) 906 WP_077000882.1 prepilin peptidase Machinery gene
  ABL847_RS27230 (ABL847_27185) pilC 5833092..5834315 (-) 1224 WP_077000883.1 type II secretion system F family protein Machinery gene
  ABL847_RS27235 (ABL847_27190) pilB 5834331..5836067 (-) 1737 WP_077000884.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 301 a.a.        Molecular weight: 32006.58 Da        Isoelectric Point: 6.6778

>NTDB_id=1007732 ABL847_RS27225 WP_077000882.1 5832187..5833092(-) (pilD) [Variovorax sp. KK3]
MLVSQGVDAALAGVLGLTVGSFLNVVIHRLPKMMERQWAADCAELQAGGAEAAVAATAAPAAPAKGADQPDDAQEPFNLM
VPRSRCPHCGHAIRWYENLPVLSYLFLRGKCASCRAPISLRYPLVELVTAALFAWCVWRMPGQFGGLAWCGFSAALLTAA
LIDWDTTYLPDDITLPLLWGGLLAAIAGFTGVSLANAVWGAVAGYLSLWAVYWLFKLTTGKEGMGYGDFKLFAAFGAWFG
WQALVPIILMASVIGVVIGLILKFNSSLREGGYVPFGPFLAGAGFTAMIFGPEAILRTVGL

Nucleotide


Download         Length: 906 bp        

>NTDB_id=1007732 ABL847_RS27225 WP_077000882.1 5832187..5833092(-) (pilD) [Variovorax sp. KK3]
ATGCTGGTGTCGCAGGGGGTGGACGCCGCGCTGGCCGGCGTGCTGGGGCTCACGGTCGGCAGCTTCCTCAACGTGGTCAT
CCACCGCCTGCCGAAGATGATGGAGCGCCAGTGGGCCGCCGACTGTGCCGAGCTCCAGGCCGGCGGTGCCGAGGCTGCCG
TGGCAGCCACCGCTGCCCCTGCCGCTCCCGCAAAAGGCGCGGACCAACCCGACGACGCGCAAGAGCCCTTCAATCTGATG
GTGCCGCGCTCGCGCTGCCCGCACTGCGGCCACGCGATCCGCTGGTACGAGAACCTGCCGGTCCTGAGCTACCTCTTCCT
TCGCGGCAAATGCGCCTCGTGCAGGGCGCCGATCAGCCTGCGCTATCCGCTGGTCGAACTCGTCACGGCGGCGCTTTTCG
CATGGTGCGTGTGGCGCATGCCCGGCCAGTTCGGCGGCCTCGCGTGGTGCGGTTTCTCCGCTGCGCTGCTCACTGCCGCG
CTGATCGACTGGGACACCACGTACCTGCCCGACGACATCACGCTGCCTCTGCTATGGGGCGGCCTGCTGGCTGCGATCGC
GGGCTTCACCGGGGTCAGCCTGGCCAATGCGGTCTGGGGCGCGGTGGCGGGCTACCTGTCGCTGTGGGCCGTCTACTGGC
TCTTCAAGCTGACCACCGGCAAAGAGGGCATGGGCTATGGCGACTTCAAGCTCTTCGCGGCCTTCGGCGCCTGGTTCGGC
TGGCAGGCGCTGGTGCCGATCATCCTGATGGCTTCGGTGATCGGCGTGGTCATCGGCCTCATCCTCAAATTCAACAGCAG
CCTGCGCGAAGGCGGCTACGTGCCCTTCGGGCCCTTCCTTGCCGGCGCCGGCTTCACGGCGATGATCTTCGGCCCGGAAG
CGATCCTGCGCACGGTCGGGCTTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(14-139)

Type IV leader peptidase family (Peptidase_A24)

(153-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

50.699

95.017

0.482
  pilD Vibrio campbellii strain DS40M4

48.264

95.681

0.462
  pilD Neisseria gonorrhoeae MS11

45.714

93.023

0.425
  pilD Acinetobacter baumannii D1279779

42.254

94.352

0.399
  pilD Acinetobacter nosocomialis M2

41.549

94.352

0.392

Multiple sequence alignment