Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA/cilB/dalA   Type   Machinery gene
Locus tag   ABKJ27_RS03785 Genome accession   NZ_CP157578
Coordinates   824937..825785 (+) Length   282 a.a.
NCBI ID   WP_410012075.1    Uniprot ID   -
Organism   Streptococcus sp. KHUD_011     
Function   ssDNA binding; loading RecA onto ssDNA; competence shut-off (predicted from homology)   
DNA processing Competence regulation

Genomic Context

Location: 819937..830785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABKJ27_RS03760 (ABKJ27_03775) - 820659..821366 (+) 708 WP_261060408.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ABKJ27_RS03765 (ABKJ27_03780) - 821371..822393 (+) 1023 WP_261104667.1 ribitol-5-phosphate dehydrogenase -
  ABKJ27_RS03770 (ABKJ27_03785) - 822410..823279 (+) 870 WP_410012074.1 phosphotransferase -
  ABKJ27_RS03775 (ABKJ27_03790) - 823269..824147 (+) 879 WP_049550666.1 DMT family transporter -
  ABKJ27_RS03780 (ABKJ27_03795) - 824159..824848 (+) 690 WP_020902399.1 CTP--phosphocholine cytidylyltransferase -
  ABKJ27_RS03785 (ABKJ27_03800) dprA/cilB/dalA 824937..825785 (+) 849 WP_410012075.1 DNA-processing protein DprA Machinery gene
  ABKJ27_RS03790 (ABKJ27_03805) topA 825903..827990 (+) 2088 WP_050253722.1 type I DNA topoisomerase -
  ABKJ27_RS03795 (ABKJ27_03810) - 828096..828455 (+) 360 WP_020901447.1 YbaN family protein -
  ABKJ27_RS03800 (ABKJ27_03815) - 828546..829178 (+) 633 WP_049533991.1 copper homeostasis protein CutC -
  ABKJ27_RS03805 (ABKJ27_03820) - 829222..829878 (+) 657 WP_410012076.1 MmcQ/YjbR family DNA-binding protein -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 31192.87 Da        Isoelectric Point: 5.2107

>NTDB_id=1007454 ABKJ27_RS03785 WP_410012075.1 824937..825785(+) (dprA/cilB/dalA) [Streptococcus sp. KHUD_011]
MKITNYEIYKLKKSGLTNQQILKVLEYGENVDQELLLGDIADISSCRNPAVFMERYFQIDDTHLEKEFQKFPSFSILDDC
YPWDLSEIYDAPVLLFYKGNLDLLKFPKVAVVGSRACSKQGAKSVEKVIQGLENELVIVSGLAKGIDTAAHMAALQNGGK
TIAVIGTGLDVFYPKVNKRLQDYIGNDHLVLSEYGPGEQPLKFHFPARNRIIAGLCRGVIVAEAKMRSGSLITCERAMEE
GRDVFAIPGSILDGLSDGCHHLIQEGAKLVTSGQDVLAEFEF

Nucleotide


Download         Length: 849 bp        

>NTDB_id=1007454 ABKJ27_RS03785 WP_410012075.1 824937..825785(+) (dprA/cilB/dalA) [Streptococcus sp. KHUD_011]
ATGAAAATCACAAACTATGAAATCTATAAGTTAAAAAAATCAGGTTTGACCAATCAACAGATTTTGAAAGTGCTAGAATA
CGGTGAAAATGTTGATCAAGAACTGTTGTTAGGTGATATTGCAGATATATCAAGTTGCCGAAATCCAGCTGTTTTTATGG
AACGTTATTTTCAGATAGACGATACGCATTTGGAGAAGGAGTTTCAAAAATTTCCATCTTTCTCTATTTTAGACGACTGT
TACCCTTGGGATTTGAGTGAAATTTATGATGCACCTGTGCTTTTATTTTACAAAGGAAATCTTGACCTCTTGAAATTTCC
TAAGGTAGCGGTTGTGGGTAGTCGTGCTTGTAGTAAACAGGGCGCTAAGTCAGTTGAAAAAGTCATTCAAGGCTTGGAAA
ATGAACTGGTTATCGTCAGTGGATTAGCCAAGGGGATCGATACAGCAGCCCATATGGCAGCCCTGCAGAATGGCGGAAAA
ACCATTGCAGTGATTGGGACAGGTCTGGATGTGTTTTATCCTAAAGTCAACAAACGTTTGCAAGACTATATCGGCAATGA
CCATCTGGTTCTAAGTGAATATGGACCTGGTGAACAACCTCTGAAATTTCATTTTCCTGCCCGTAATCGAATCATTGCTG
GACTTTGTCGAGGTGTGATTGTAGCAGAGGCTAAGATGCGCTCAGGTAGTCTCATTACCTGTGAGAGAGCAATGGAAGAA
GGGCGCGATGTCTTTGCTATTCCTGGTAGCATTTTAGATGGACTGTCAGATGGTTGCCATCATTTGATTCAAGAAGGGGC
AAAATTGGTCACCAGTGGACAGGATGTTCTTGCGGAATTTGAATTTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-271)

DNA processing protein A sterile alpha motif domain (SAM_DprA)

(3-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

98.582

100

0.986
  dprA/cilB/dalA Streptococcus pneumoniae D39

98.582

100

0.986
  dprA/cilB/dalA Streptococcus pneumoniae R6

98.582

100

0.986
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

98.582

100

0.986
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

97.872

100

0.979
  dprA/cilB/dalA Streptococcus mitis SK321

97.163

100

0.972
  dprA Streptococcus mutans UA159

63.214

99.291

0.628
  dprA Lactococcus lactis subsp. cremoris KW2

55.714

99.291

0.553
  dprA Latilactobacillus sakei subsp. sakei 23K

41.053

100

0.415
  dprA Staphylococcus aureus N315

37.809

100

0.379
  dprA Acinetobacter baumannii D1279779

35.836

100

0.372
  dprA Acinetobacter baumannii strain A118

35.154

100

0.365
  dprA Haemophilus influenzae Rd KW20

38.202

94.681

0.362

Multiple sequence alignment