Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ABLU27_RS05940 Genome accession   NZ_CP157500
Coordinates   1086503..1086892 (+) Length   129 a.a.
NCBI ID   WP_406835312.1    Uniprot ID   -
Organism   Lactococcus lactis strain 2B-9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1086503..1089870 1086503..1086892 within 0


Gene organization within MGE regions


Location: 1086503..1089870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLU27_RS05940 (ABLU27_05940) ssbB 1086503..1086892 (+) 390 WP_406835312.1 single-stranded DNA-binding protein Machinery gene
  ABLU27_RS05945 (ABLU27_05945) groES 1087012..1087296 (+) 285 WP_003131589.1 co-chaperone GroES -
  ABLU27_RS05950 (ABLU27_05950) groL 1087384..1089012 (+) 1629 WP_003131585.1 chaperonin GroEL -
  ABLU27_RS05955 (ABLU27_05955) - 1089058..1089870 (-) 813 WP_311875190.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14626.66 Da        Isoelectric Point: 8.4046

>NTDB_id=1007292 ABLU27_RS05940 WP_406835312.1 1086503..1086892(+) (ssbB) [Lactococcus lactis strain 2B-9]
MNKTMLIGRLTSTPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSSAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAIKTEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=1007292 ABLU27_RS05940 WP_406835312.1 1086503..1086892(+) (ssbB) [Lactococcus lactis strain 2B-9]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTACGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTGGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTAGTTTCTTCCGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTATAAAGACTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

89.147

100

0.891
  ssbB Streptococcus sobrinus strain NIDR 6715-7

59.231

100

0.597
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.923

100

0.574
  ssbB/cilA Streptococcus pneumoniae Rx1

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae D39

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae R6

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

56.154

100

0.566
  ssbB/cilA Streptococcus mitis SK321

56.154

100

0.566
  ssbA Streptococcus mutans UA159

55.385

100

0.558
  ssb Latilactobacillus sakei subsp. sakei 23K

43.75

86.822

0.38
  ssbA Bacillus subtilis subsp. subtilis str. 168

44.762

81.395

0.364

Multiple sequence alignment