Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | ABGM96_RS25040 | Genome accession | NZ_CP157360 |
| Coordinates | 5130085..5130447 (-) | Length | 120 a.a. |
| NCBI ID | WP_202186258.1 | Uniprot ID | - |
| Organism | Peribacillus frigoritolerans strain C1141 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5125085..5135447
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABGM96_RS25025 | - | 5126035..5127651 (-) | 1617 | WP_048685795.1 | ABC transporter substrate-binding protein | - |
| ABGM96_RS25030 | - | 5127694..5128662 (-) | 969 | WP_375563837.1 | ABC transporter ATP-binding protein | - |
| ABGM96_RS25035 | - | 5128643..5129647 (-) | 1005 | WP_152908346.1 | ABC transporter ATP-binding protein | - |
| ABGM96_RS25040 | ssbB | 5130085..5130447 (-) | 363 | WP_202186258.1 | single-stranded DNA-binding protein | Machinery gene |
| ABGM96_RS25045 | - | 5130807..5131241 (+) | 435 | WP_034315749.1 | YwpF family protein | - |
| ABGM96_RS25050 | - | 5131355..5131654 (-) | 300 | WP_048685804.1 | hypothetical protein | - |
| ABGM96_RS25055 | fabZ | 5131944..5132372 (-) | 429 | WP_048685806.1 | 3-hydroxyacyl-ACP dehydratase FabZ | - |
| ABGM96_RS25060 | - | 5132501..5132755 (-) | 255 | WP_053087418.1 | DNA-directed RNA polymerase subunit beta | - |
| ABGM96_RS25065 | - | 5132924..5133766 (-) | 843 | WP_375563834.1 | flagellar hook-basal body protein | - |
| ABGM96_RS25070 | - | 5133815..5134654 (-) | 840 | WP_375563832.1 | flagellar hook-basal body protein | - |
Sequence
Protein
Download Length: 120 a.a. Molecular weight: 13655.54 Da Isoelectric Point: 9.6263
>NTDB_id=1006293 ABGM96_RS25040 WP_202186258.1 5130085..5130447(-) (ssbB) [Peribacillus frigoritolerans strain C1141]
MINQVTLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTVGNYEADFVQCIIWKKSAENTAQYCKKGAIIGITGRIQTR
RYENQEGKYVYVTEVVAERVQFIGTKQHDGKSKDFEHIGL
MINQVTLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTVGNYEADFVQCIIWKKSAENTAQYCKKGAIIGITGRIQTR
RYENQEGKYVYVTEVVAERVQFIGTKQHDGKSKDFEHIGL
Nucleotide
Download Length: 363 bp
>NTDB_id=1006293 ABGM96_RS25040 WP_202186258.1 5130085..5130447(-) (ssbB) [Peribacillus frigoritolerans strain C1141]
ATGATTAATCAAGTTACCCTCGTCGGCAGGCTTACGAAGGATCCAGAATTAAGATACACACCCGATGGCAAGGCTGTTTC
GAATATCACATTAGCAGTCAACCGGAACTTCCGTAATACTGTCGGTAACTATGAGGCAGACTTTGTACAGTGTATCATAT
GGAAAAAGTCGGCTGAAAATACTGCTCAATATTGTAAAAAAGGAGCCATAATCGGTATAACTGGCAGAATACAAACAAGA
AGATACGAAAATCAGGAGGGTAAATATGTATATGTAACTGAAGTGGTCGCCGAGAGGGTTCAATTCATCGGAACTAAACA
ACATGATGGTAAGTCCAAAGATTTTGAACATATTGGTTTATAG
ATGATTAATCAAGTTACCCTCGTCGGCAGGCTTACGAAGGATCCAGAATTAAGATACACACCCGATGGCAAGGCTGTTTC
GAATATCACATTAGCAGTCAACCGGAACTTCCGTAATACTGTCGGTAACTATGAGGCAGACTTTGTACAGTGTATCATAT
GGAAAAAGTCGGCTGAAAATACTGCTCAATATTGTAAAAAAGGAGCCATAATCGGTATAACTGGCAGAATACAAACAAGA
AGATACGAAAATCAGGAGGGTAAATATGTATATGTAACTGAAGTGGTCGCCGAGAGGGTTCAATTCATCGGAACTAAACA
ACATGATGGTAAGTCCAAAGATTTTGAACATATTGGTTTATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
61.468 |
90.833 |
0.558 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.321 |
88.333 |
0.542 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
52.893 |
100 |
0.533 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
44.34 |
88.333 |
0.392 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
42.453 |
88.333 |
0.375 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
42.453 |
88.333 |
0.375 |
| ssbB/cilA | Streptococcus mitis SK321 |
41.509 |
88.333 |
0.367 |
| ssbA | Streptococcus mutans UA159 |
41.509 |
88.333 |
0.367 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
41.509 |
88.333 |
0.367 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
41.509 |
88.333 |
0.367 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
41.509 |
88.333 |
0.367 |