Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABHF33_RS05525 Genome accession   NZ_CP157355
Coordinates   1202704..1203930 (+) Length   408 a.a.
NCBI ID   WP_348946008.1    Uniprot ID   A0AAU7FCY6
Organism   Chitinibacter sp. FCG-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1197704..1208930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHF33_RS05505 (ABHF33_05505) rpsP 1198176..1198421 (-) 246 WP_348946004.1 30S ribosomal protein S16 -
  ABHF33_RS05510 (ABHF33_05510) ffh 1198521..1199864 (-) 1344 WP_348946005.1 signal recognition particle protein -
  ABHF33_RS05515 (ABHF33_05515) ccsA 1199946..1200752 (+) 807 WP_348946006.1 cytochrome c biogenesis protein CcsA -
  ABHF33_RS05520 (ABHF33_05520) pilB 1200984..1202690 (+) 1707 WP_348946007.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABHF33_RS05525 (ABHF33_05525) pilC 1202704..1203930 (+) 1227 WP_348946008.1 type II secretion system F family protein Machinery gene
  ABHF33_RS05530 (ABHF33_05530) pilD 1203930..1204784 (+) 855 WP_348946009.1 A24 family peptidase Machinery gene
  ABHF33_RS05535 (ABHF33_05535) coaE 1204786..1205391 (+) 606 WP_348946010.1 dephospho-CoA kinase -
  ABHF33_RS05540 (ABHF33_05540) zapD 1205427..1206185 (+) 759 WP_348946011.1 cell division protein ZapD -
  ABHF33_RS05545 (ABHF33_05545) - 1206182..1206388 (+) 207 WP_348946012.1 DNA gyrase inhibitor YacG -
  ABHF33_RS05550 (ABHF33_05550) - 1206626..1207375 (+) 750 WP_348946013.1 GNAT family N-acetyltransferase -
  ABHF33_RS05555 (ABHF33_05555) - 1207430..1208242 (+) 813 WP_348946014.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44610.59 Da        Isoelectric Point: 10.0754

>NTDB_id=1006237 ABHF33_RS05525 WP_348946008.1 1202704..1203930(+) (pilC) [Chitinibacter sp. FCG-7]
MATKTKTPNLKDFTFRWEGKDRTNKIVKGEMRASGEAVVKSTLRRQGINVTSIKKVRLGAGRKITELDIAMFTRQLATML
KSGVPLLTAFDIVAKGHSNPSVTKLLMEIKTDIETGSSLTQAFRRHPNQFDALYCNLVQAGEQAGILDALLARLATYKEK
ILAVKKKIKSAMFYPTAVLVTAFVITAVIMIFVIPAFKDLFSSFGADLPGPTLLVMAISDFFVSYWYIIFGGIFGGIYLF
LQAWKKSEKLQFFMDRLLLKLPVFGQIVRNATIARWTRTLATMFAAGVPLVESLESVGGASGNIVYKLATQKIQAEVSTG
TNLTTAMQNANVFPNMVMQMTSIGEESGSLDSMLSKVADYFEEEVDNAVEALSSLMEPVIMVVLGTLIGGLVVAMYLPIF
KMGAAVAG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=1006237 ABHF33_RS05525 WP_348946008.1 1202704..1203930(+) (pilC) [Chitinibacter sp. FCG-7]
ATGGCAACTAAAACAAAAACACCCAACCTCAAAGACTTCACCTTTCGCTGGGAAGGAAAAGATCGTACTAACAAAATCGT
CAAAGGTGAAATGCGTGCCAGTGGTGAAGCTGTAGTTAAAAGCACACTGCGCCGCCAAGGGATCAACGTCACCAGCATCA
AGAAAGTACGCCTTGGTGCAGGGCGAAAAATTACCGAGCTTGATATTGCCATGTTTACGCGACAATTGGCCACCATGCTA
AAATCGGGAGTACCTTTGCTTACGGCATTTGACATTGTAGCCAAAGGTCATAGCAATCCCTCAGTCACCAAGCTATTGAT
GGAAATTAAAACCGATATTGAAACTGGCTCTTCTCTGACCCAAGCATTTCGTAGACACCCCAATCAGTTCGACGCTCTTT
ACTGTAATTTGGTACAAGCCGGTGAGCAGGCCGGTATTCTGGATGCCTTGCTAGCTCGCCTAGCAACGTATAAAGAAAAA
ATTCTGGCTGTAAAAAAGAAAATCAAGTCTGCGATGTTTTATCCGACTGCGGTTCTTGTTACTGCATTTGTTATTACGGC
CGTAATCATGATTTTTGTAATTCCAGCATTCAAAGACCTCTTCTCAAGTTTTGGTGCTGATCTGCCAGGCCCCACCTTAT
TAGTGATGGCGATTTCTGACTTTTTTGTTTCATATTGGTACATTATTTTTGGCGGAATTTTTGGCGGAATTTATTTATTC
CTTCAGGCTTGGAAAAAATCAGAAAAGCTCCAATTTTTCATGGACCGTTTACTGTTAAAGCTACCAGTTTTTGGTCAAAT
TGTACGCAACGCAACGATTGCCCGCTGGACACGAACCCTTGCAACAATGTTTGCAGCTGGCGTGCCACTGGTTGAATCTC
TGGAGTCCGTTGGAGGCGCATCAGGAAATATCGTTTACAAACTAGCGACACAAAAAATTCAAGCCGAAGTCAGCACTGGA
ACTAATTTAACCACGGCCATGCAGAACGCCAATGTATTTCCAAATATGGTGATGCAAATGACGTCGATTGGTGAAGAGTC
CGGCTCTCTTGACTCCATGCTGAGCAAAGTTGCCGATTATTTTGAAGAAGAAGTCGACAATGCTGTTGAGGCTCTGTCAA
GCTTGATGGAACCTGTGATTATGGTGGTTCTAGGCACACTGATTGGTGGCCTAGTTGTTGCAATGTACCTGCCGATTTTC
AAAATGGGCGCAGCGGTGGCTGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.518

97.549

0.522
  pilC Acinetobacter baumannii D1279779

51.508

97.549

0.502
  pilG Neisseria gonorrhoeae MS11

51.508

97.549

0.502
  pilC Pseudomonas stutzeri DSM 10701

51.25

98.039

0.502
  pilG Neisseria meningitidis 44/76-A

51.005

97.549

0.498
  pilC Acinetobacter baylyi ADP1

50.63

97.304

0.493
  pilC Vibrio cholerae strain A1552

39.753

99.265

0.395
  pilC Vibrio campbellii strain DS40M4

37.624

99.02

0.373
  pilC Thermus thermophilus HB27

36.145

100

0.368

Multiple sequence alignment