Detailed information NTG1006238

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABHF33_RS05530
• Genome accession: NZ_CP157355
• Coordinates: 1203930..1204784 (+)
• Length: 284 a.a.
• NCBI ID: WP_348946009.1
• Uniprot ID: A0AAU7FCF4
• Organism: Chitinibacter sp. FCG-7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1198930..1209784

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABHF33_RS05515 (ABHF33_05515)	ccsA	1199946..1200752 (+)	807	WP_348946006.1	cytochrome c biogenesis protein CcsA	-
ABHF33_RS05520 (ABHF33_05520)	pilB	1200984..1202690 (+)	1707	WP_348946007.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABHF33_RS05525 (ABHF33_05525)	pilC	1202704..1203930 (+)	1227	WP_348946008.1	type II secretion system F family protein	Machinery gene
ABHF33_RS05530 (ABHF33_05530)	pilD	1203930..1204784 (+)	855	WP_348946009.1	A24 family peptidase	Machinery gene
ABHF33_RS05535 (ABHF33_05535)	coaE	1204786..1205391 (+)	606	WP_348946010.1	dephospho-CoA kinase	-
ABHF33_RS05540 (ABHF33_05540)	zapD	1205427..1206185 (+)	759	WP_348946011.1	cell division protein ZapD	-
ABHF33_RS05545 (ABHF33_05545)	-	1206182..1206388 (+)	207	WP_348946012.1	DNA gyrase inhibitor YacG	-
ABHF33_RS05550 (ABHF33_05550)	-	1206626..1207375 (+)	750	WP_348946013.1	GNAT family N-acetyltransferase	-
ABHF33_RS05555 (ABHF33_05555)	-	1207430..1208242 (+)	813	WP_348946014.1	lysophospholipid acyltransferase family protein	-
ABHF33_RS05560 (ABHF33_05560)	-	1208166..1208984 (-)	819	WP_348946015.1	symmetrical bis(5'-nucleosyl)-tetraphosphatase	-
ABHF33_RS05565 (ABHF33_05565)	rplQ	1209066..1209446 (-)	381	WP_157670818.1	50S ribosomal protein L17	-

Sequence

Protein

• Length: 284 a.a.
• Molecular weight: 30695.50 Da
• Isoelectric Point: 7.1415

>NTDB_id=1006238 ABHF33_RS05530 WP_348946009.1 1203930..1204784(+) (pilD) [Chitinibacter sp. FCG-7]
MLELIQTGIGLLVFTGLIGLFVGSFLNVVIHRLPIMMEREFRAECQNFAGTTTEQDQNDTYNLAIPRSACPKCQHQITAL
ENIPVISWLALRGKCSNCKIPISIRYPLVELSTSLISIGLAWHFGYGLALLGALLFAWALIALILIDADTCLLPDSITLP
LVWLGILFNTQGVYTTLPSAVYGAVAGYMSLWSIYWLFKLATGKEGMGYGDFKLLAALGAWLGAAMLPAIILLSSLSGAV
IGLIMIAGAKRGWNKPMPFGPYLGIAGLLALIWGQDLSQALYGL

Nucleotide

• Length: 855 bp

>NTDB_id=1006238 ABHF33_RS05530 WP_348946009.1 1203930..1204784(+) (pilD) [Chitinibacter sp. FCG-7]
ATGCTGGAATTAATACAAACAGGAATTGGCCTATTGGTTTTTACAGGCCTGATTGGTTTATTTGTTGGCAGTTTTTTAAA
TGTTGTGATACACAGACTCCCGATTATGATGGAGAGAGAATTTCGTGCCGAATGCCAGAACTTTGCAGGAACTACCACAG
AGCAAGATCAGAATGACACTTACAACCTAGCCATTCCAAGATCTGCCTGCCCCAAATGTCAGCACCAGATTACTGCCCTG
GAAAATATCCCGGTCATTAGCTGGCTGGCGCTCAGAGGCAAGTGCAGTAATTGCAAAATTCCTATCAGCATCCGATACCC
GTTGGTAGAACTGAGCACTAGCCTGATCTCCATCGGTCTGGCTTGGCATTTTGGCTATGGCTTAGCGCTACTCGGAGCTC
TCTTATTTGCCTGGGCATTGATTGCCTTGATTTTGATTGATGCCGATACTTGTCTGCTCCCAGACAGCATTACACTGCCA
CTGGTATGGCTGGGCATTTTATTCAATACCCAAGGTGTCTACACCACCTTACCCAGTGCAGTATATGGCGCAGTCGCAGG
CTATATGAGCCTTTGGAGCATATACTGGCTATTCAAGCTGGCAACAGGCAAAGAGGGTATGGGTTATGGCGACTTCAAAC
TATTGGCTGCCCTTGGTGCATGGCTAGGCGCAGCCATGCTGCCTGCGATCATTTTACTGTCCTCCCTAAGTGGCGCAGTC
ATCGGTCTGATTATGATTGCTGGCGCCAAACGCGGCTGGAATAAGCCCATGCCATTTGGCCCTTACCTTGGGATTGCAGG
GCTTCTGGCGCTGATCTGGGGGCAGGATTTAAGCCAAGCTTTGTACGGGCTGTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-243)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	56.767	93.662	0.532
pilD	Vibrio campbellii strain DS40M4	54.104	94.366	0.511
pilD	Acinetobacter baumannii D1279779	50.357	98.592	0.496
pilD	Acinetobacter nosocomialis M2	49.643	98.592	0.489
pilD	Neisseria gonorrhoeae MS11	50.397	88.732	0.447