Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FGL00_RS00820 Genome accession   NZ_LR594034
Coordinates   132773..133168 (+) Length   131 a.a.
NCBI ID   WP_003053955.1    Uniprot ID   A0ABU0AA74
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 127773..138168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL00_RS00790 (NCTC8546_00162) pepA 128318..129385 (-) 1068 WP_138098135.1 glutamyl aminopeptidase -
  FGL00_RS00800 (NCTC8546_00163) - 129943..130227 (+) 285 WP_172600589.1 DUF4651 domain-containing protein -
  FGL00_RS00805 (NCTC8546_00164) - 130224..130541 (+) 318 WP_003055817.1 thioredoxin family protein -
  FGL00_RS00810 (NCTC8546_00165) ytpR 130559..131185 (+) 627 WP_046177418.1 YtpR family tRNA-binding protein -
  FGL00_RS00815 - 131300..132648 (+) 1349 WP_138083753.1 IS3 family transposase -
  FGL00_RS00820 (NCTC8546_00168) ssbA 132773..133168 (+) 396 WP_003053955.1 single-stranded DNA-binding protein Machinery gene
  FGL00_RS00825 (NCTC8546_00169) - 133428..134069 (-) 642 WP_138098139.1 deoxynucleoside kinase -
  FGL00_RS00830 (NCTC8546_00170) dusB 134089..135066 (-) 978 WP_002986502.1 tRNA dihydrouridine synthase DusB -
  FGL00_RS00835 (NCTC8546_00171) hslO 135053..135925 (-) 873 WP_014611939.1 Hsp33 family molecular chaperone HslO -
  FGL00_RS00840 (NCTC8546_00172) rofA 136072..137565 (-) 1494 WP_138098141.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14787.96 Da        Isoelectric Point: 8.0157

>NTDB_id=1004902 FGL00_RS00820 WP_003053955.1 132773..133168(+) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1004902 FGL00_RS00820 WP_003053955.1 132773..133168(+) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC8546]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCCGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment