Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ABHF04_RS09640 | Genome accession | NZ_CP156997 |
| Coordinates | 1948098..1948523 (+) | Length | 141 a.a. |
| NCBI ID | WP_347920878.1 | Uniprot ID | - |
| Organism | Pediococcus acidilactici strain 13_7 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1943098..1953523
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABHF04_RS09580 (ABHF04_09580) | - | 1943342..1943530 (+) | 189 | WP_159218508.1 | hypothetical protein | - |
| ABHF04_RS09585 (ABHF04_09585) | - | 1943550..1943720 (+) | 171 | WP_162013319.1 | hypothetical protein | - |
| ABHF04_RS09590 (ABHF04_09590) | - | 1943717..1943920 (-) | 204 | WP_162013320.1 | hypothetical protein | - |
| ABHF04_RS09595 (ABHF04_09595) | - | 1943982..1944188 (+) | 207 | WP_094104442.1 | hypothetical protein | - |
| ABHF04_RS09600 (ABHF04_09600) | - | 1944178..1944486 (-) | 309 | WP_160216151.1 | hypothetical protein | - |
| ABHF04_RS09605 (ABHF04_09605) | - | 1944546..1945268 (+) | 723 | WP_347920870.1 | Rha family transcriptional regulator | - |
| ABHF04_RS09610 (ABHF04_09610) | - | 1945282..1945611 (+) | 330 | WP_347920872.1 | DUF771 domain-containing protein | - |
| ABHF04_RS09615 (ABHF04_09615) | - | 1945712..1945885 (+) | 174 | WP_336118393.1 | hypothetical protein | - |
| ABHF04_RS09620 (ABHF04_09620) | - | 1945882..1946499 (-) | 618 | WP_159209346.1 | hypothetical protein | - |
| ABHF04_RS09625 (ABHF04_09625) | - | 1946725..1947180 (+) | 456 | WP_347920874.1 | chromosome segregation protein SMC | - |
| ABHF04_RS09630 (ABHF04_09630) | - | 1947181..1947906 (+) | 726 | WP_347920876.1 | ERF family protein | - |
| ABHF04_RS09635 (ABHF04_09635) | - | 1947899..1948105 (+) | 207 | WP_024863113.1 | hypothetical protein | - |
| ABHF04_RS09640 (ABHF04_09640) | ssb | 1948098..1948523 (+) | 426 | WP_347920878.1 | single-stranded DNA-binding protein | Machinery gene |
| ABHF04_RS09645 (ABHF04_09645) | - | 1948534..1949235 (+) | 702 | WP_274583868.1 | putative HNHc nuclease | - |
| ABHF04_RS09650 (ABHF04_09650) | - | 1949213..1949977 (+) | 765 | WP_347920881.1 | conserved phage C-terminal domain-containing protein | - |
| ABHF04_RS09655 (ABHF04_09655) | - | 1949958..1950773 (+) | 816 | WP_347920883.1 | ATP-binding protein | - |
| ABHF04_RS09660 (ABHF04_09660) | - | 1950891..1951523 (+) | 633 | WP_347920885.1 | RNA polymerase subunit sigma-70 | - |
| ABHF04_RS09665 (ABHF04_09665) | - | 1951590..1951658 (+) | 69 | WP_235019140.1 | hypothetical protein | - |
| ABHF04_RS09670 (ABHF04_09670) | - | 1951655..1951804 (+) | 150 | WP_200834821.1 | hypothetical protein | - |
| ABHF04_RS09675 (ABHF04_09675) | - | 1951791..1952162 (+) | 372 | WP_159218501.1 | N-acetylmuramoyl-L-alanine amidase | - |
| ABHF04_RS09680 (ABHF04_09680) | - | 1952332..1952859 (+) | 528 | WP_159218500.1 | DUF1642 domain-containing protein | - |
| ABHF04_RS09685 (ABHF04_09685) | - | 1952859..1953308 (+) | 450 | WP_159218499.1 | DUF1642 domain-containing protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15626.39 Da Isoelectric Point: 7.9972
>NTDB_id=1003807 ABHF04_RS09640 WP_347920878.1 1948098..1948523(+) (ssb) [Pediococcus acidilactici strain 13_7]
MINRTVLIGRLTKDVELRHTAKGDAVASFTVAVNRQFTNSQGEREVDFINCVMWRKAAENFAKYTQKGSLVGIEGRIQTR
SYENQQGQRVYVTEVVAENFSLLDSKPKGNQQNNARQASTPGDPFANGGQSIDIGDDSLPF
MINRTVLIGRLTKDVELRHTAKGDAVASFTVAVNRQFTNSQGEREVDFINCVMWRKAAENFAKYTQKGSLVGIEGRIQTR
SYENQQGQRVYVTEVVAENFSLLDSKPKGNQQNNARQASTPGDPFANGGQSIDIGDDSLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=1003807 ABHF04_RS09640 WP_347920878.1 1948098..1948523(+) (ssb) [Pediococcus acidilactici strain 13_7]
ATGATTAATCGAACAGTACTAATAGGACGCCTAACTAAAGATGTTGAGCTTCGCCACACGGCTAAAGGCGATGCGGTAGC
TAGTTTTACTGTGGCAGTTAACCGACAGTTTACCAACTCACAGGGTGAACGCGAAGTGGATTTCATCAACTGTGTAATGT
GGCGTAAGGCAGCAGAAAACTTTGCCAAGTACACACAAAAAGGTTCGTTGGTAGGCATTGAGGGTCGAATTCAAACTCGT
TCCTACGAGAATCAACAAGGACAACGAGTGTACGTTACCGAAGTTGTTGCGGAAAACTTCTCGTTGCTGGATTCGAAACC
GAAAGGCAACCAGCAAAATAACGCACGGCAAGCATCAACGCCGGGAGATCCATTCGCTAATGGCGGACAATCAATTGATA
TTGGTGACGATAGTTTGCCTTTCTAA
ATGATTAATCGAACAGTACTAATAGGACGCCTAACTAAAGATGTTGAGCTTCGCCACACGGCTAAAGGCGATGCGGTAGC
TAGTTTTACTGTGGCAGTTAACCGACAGTTTACCAACTCACAGGGTGAACGCGAAGTGGATTTCATCAACTGTGTAATGT
GGCGTAAGGCAGCAGAAAACTTTGCCAAGTACACACAAAAAGGTTCGTTGGTAGGCATTGAGGGTCGAATTCAAACTCGT
TCCTACGAGAATCAACAAGGACAACGAGTGTACGTTACCGAAGTTGTTGCGGAAAACTTCTCGTTGCTGGATTCGAAACC
GAAAGGCAACCAGCAAAATAACGCACGGCAAGCATCAACGCCGGGAGATCCATTCGCTAATGGCGGACAATCAATTGATA
TTGGTGACGATAGTTTGCCTTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.059 |
100 |
0.688 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
53.488 |
100 |
0.652 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
60.185 |
76.596 |
0.461 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
40.845 |
100 |
0.411 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
40.845 |
100 |
0.411 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
40.141 |
100 |
0.404 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
40.141 |
100 |
0.404 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
40.141 |
100 |
0.404 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
40.141 |
100 |
0.404 |
| ssbB/cilA | Streptococcus mitis SK321 |
40.141 |
100 |
0.404 |
| ssbA | Streptococcus mutans UA159 |
36.62 |
100 |
0.369 |