Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABHI23_RS16370 Genome accession   NZ_CP156913
Coordinates   3843260..3844519 (+) Length   419 a.a.
NCBI ID   WP_033483308.1    Uniprot ID   -
Organism   Xanthomonas citri pv. mangiferaeindicae strain CFBP 1716     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3841149..3854326 3843260..3844519 within 0


Gene organization within MGE regions


Location: 3841149..3854326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABHI23_RS16355 (ABHI23_16355) - 3841149..3842111 (-) 963 WP_103791079.1 IS1595-like element IS1595 family transposase -
  ABHI23_RS16360 (ABHI23_16360) pilA2 3842199..3842390 (-) 192 WP_157380112.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  ABHI23_RS16365 (ABHI23_16365) comP 3842487..3842915 (-) 429 WP_005921364.1 pilin Machinery gene
  ABHI23_RS16370 (ABHI23_16370) pilC 3843260..3844519 (+) 1260 WP_033483308.1 type II secretion system F family protein Machinery gene
  ABHI23_RS16375 (ABHI23_16375) - 3844526..3845389 (+) 864 WP_003491180.1 A24 family peptidase -
  ABHI23_RS16380 (ABHI23_16380) coaE 3845403..3846011 (+) 609 WP_003491178.1 dephospho-CoA kinase -
  ABHI23_RS16385 (ABHI23_16385) - 3846109..3847071 (+) 963 WP_103791079.1 IS1595-like element IS1595 family transposase -
  ABHI23_RS16390 (ABHI23_16390) - 3847888..3849044 (+) 1157 WP_087942126.1 IS3-like element ISXc8 family transposase -
  ABHI23_RS16395 (ABHI23_16395) - 3849049..3853119 (-) 4071 Protein_3214 RHS repeat-associated core domain-containing protein -
  ABHI23_RS16400 (ABHI23_16400) - 3853364..3854326 (-) 963 WP_103791079.1 IS1595-like element IS1595 family transposase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45904.39 Da        Isoelectric Point: 10.3006

>NTDB_id=1003195 ABHI23_RS16370 WP_033483308.1 3843260..3844519(+) (pilC) [Xanthomonas citri pv. mangiferaeindicae strain CFBP 1716]
MSVARNVIKKQPADRSNSQMQPFVWEGTDKRGIKMKGEQAARNVNMLRAELRRQGITPTVVKPKPKPLFGAAGKKVGPKD
IAFFSRQMATMMKSGVPIVGSLEIIGEGHKNPRMRKMVGQIRTDIEGGSSLHEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVANYKENIEALKGKIKKALFYPAMVVAVALIVSAILLIFVVPQFEEVFKGFGAELPAFTQMIVAASRFMISYWWL
MLLVIGGAITGFIFAYKRSPRMQHGMDRLVLKVPVIGQIMYNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEE
AVLRMRDDVSVGYPVNMAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1003195 ABHI23_RS16370 WP_033483308.1 3843260..3844519(+) (pilC) [Xanthomonas citri pv. mangiferaeindicae strain CFBP 1716]
ATGTCAGTCGCGCGTAACGTAATCAAAAAACAGCCAGCCGACCGAAGCAACAGCCAGATGCAGCCTTTTGTATGGGAGGG
GACGGATAAGCGTGGCATCAAGATGAAAGGGGAGCAGGCGGCGCGCAATGTGAACATGTTGCGTGCAGAGCTTCGTCGCC
AGGGCATTACGCCCACTGTCGTCAAGCCCAAGCCCAAACCACTTTTTGGCGCTGCCGGCAAAAAAGTGGGCCCTAAGGAC
ATTGCGTTTTTCAGTCGTCAGATGGCAACTATGATGAAGTCCGGCGTTCCCATCGTAGGATCGCTTGAGATCATTGGCGA
GGGGCACAAAAACCCACGAATGAGGAAAATGGTCGGCCAGATAAGGACCGACATTGAAGGCGGCTCTTCACTGCATGAAG
CGATCAGCAAGCATCCGGTACAGTTTGACGAGCTCTACCGCAACCTTGTCCGCGCGGGAGAGGGCGCAGGCGTGCTGGAG
ACAGTCTTAGACACAGTCGCCAATTACAAAGAAAACATTGAGGCCTTGAAAGGCAAGATCAAGAAGGCGCTCTTCTACCC
CGCAATGGTCGTTGCAGTCGCCCTCATTGTTAGCGCCATCTTGCTCATTTTTGTTGTTCCACAGTTCGAAGAAGTCTTCA
AAGGGTTTGGAGCCGAACTTCCCGCGTTCACACAGATGATCGTTGCGGCATCTCGCTTCATGATCAGCTACTGGTGGCTA
ATGCTGCTCGTCATCGGTGGCGCGATTACCGGCTTCATCTTCGCTTACAAGCGCTCACCTCGCATGCAACATGGCATGGA
TCGCCTGGTCTTGAAGGTGCCTGTCATCGGCCAAATTATGTATAACAGTTCCATTGCAAGGTTTGCGCGCACGACCGCCG
TGACCTTCAAGGCTGGCGTTCCGCTCGTGGAAGCACTCGGCATTGTTGCGGGGGCGACTGGTAACAAAGTTTATGAAGAA
GCAGTGCTGCGCATGCGTGACGACGTATCGGTGGGCTATCCAGTCAACATGGCCATGAAGCAGGTCAACCTGTTCCCACA
CATGGTTATTCAAATGACTGCGATTGGCGAGGAAGCAGGCGCACTGGATGCCATGCTGTTTAAGGTTGCTGAGTATTTCG
AGCAGGAGGTCAACAATGCCGTGGATGCGTTGAGCAGCCTGCTTGAACCAATGATCATGGTGTTCATCGGCACCATCGTC
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTCGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.545

94.511

0.516
  pilC Acinetobacter baylyi ADP1

53.218

96.42

0.513
  pilC Legionella pneumophila strain ERS1305867

51.605

96.659

0.499
  pilC Acinetobacter baumannii D1279779

51.485

96.42

0.496
  pilG Neisseria gonorrhoeae MS11

44.638

95.704

0.427
  pilG Neisseria meningitidis 44/76-A

44.14

95.704

0.422
  pilC Vibrio cholerae strain A1552

41.5

95.465

0.396
  pilC Vibrio campbellii strain DS40M4

39.702

96.181

0.382
  pilC Thermus thermophilus HB27

37.905

95.704

0.363

Multiple sequence alignment