Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   ABEF88_RS01890 Genome accession   NZ_CP156804
Coordinates   390919..393042 (+) Length   707 a.a.
NCBI ID   WP_347453500.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7881     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 385919..398042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF88_RS01870 (ABEF88_01870) pilM 387912..388970 (+) 1059 WP_034585542.1 pilus assembly protein PilM Machinery gene
  ABEF88_RS01875 (ABEF88_01875) pilN 388970..389614 (+) 645 WP_347453499.1 PilN domain-containing protein Machinery gene
  ABEF88_RS01880 (ABEF88_01880) comO 389611..390330 (+) 720 WP_404798961.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF88_RS01885 (ABEF88_01885) pilP 390330..390857 (+) 528 WP_034585535.1 pilus assembly protein PilP Machinery gene
  ABEF88_RS01890 (ABEF88_01890) pilQ 390919..393042 (+) 2124 WP_347453500.1 type IV pilus secretin PilQ family protein Machinery gene
  ABEF88_RS01895 (ABEF88_01895) aroK 393079..393615 (+) 537 WP_347453501.1 shikimate kinase AroK -
  ABEF88_RS01900 (ABEF88_01900) aroB 393643..394722 (+) 1080 WP_347453502.1 3-dehydroquinate synthase -
  ABEF88_RS01905 (ABEF88_01905) - 394736..395587 (+) 852 WP_347453503.1 hypothetical protein -

Sequence

Protein


Download         Length: 707 a.a.        Molecular weight: 77202.27 Da        Isoelectric Point: 5.0922

>NTDB_id=1002962 ABEF88_RS01890 WP_347453500.1 390919..393042(+) (pilQ) [Acinetobacter thermotolerans strain ANC 7881]
MNHVFRQFSMGAVAIAVMQAASAQIAITNVVPMQVPGQGTEIRVMFNGLPPQPQAYQLESPSRLILDFEQAQQNLKQGNI
PVATKEANSVDVSSDAQRARLTVNLADAGAFTTRVEGNTFILKINSNSPAAVVQPVVQQAAQGITNIGFQRGAKGEGQVV
IDLASGNTPVDVQQQGTKIVVRALGSKIPAHLTRRLNVNDFATPVSTVDAVNQNGSGVITIQTSDSYEYMAYQTDNKLTI
SLKRPEEKNPLRPKAAHHYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVPWDQALDIVLKTKNL
DKRRNGNVIWIAPVTELIKAEEEEAKALAQSVKLAPIQTEYIQLNYAKAADIEKLITQNKGASNSGSSNSNNNSDDKESL
LSSRGSISIDARTNTLIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRASTEFTKEIGVKWGVLSQGITNNNHLLVGG
SDTTLWNLREPERNDELGGYTYEIERPQNLNVDLGVTNAAGKIAFGLISLSDFMLDLELSALQADGYGEVISTPKVLTAD
KQKATVESGFEVPYQSTEGSGASATATTEFKDVVLKLDVTPSITPDGKVQMDLDISSDSIAGVTPMGEYYLNKNRLNTNV
LVENGETVVLGGIFEQENLNQQTKVPFLGDIPYLGRLFRKDTKSDNKRELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2124 bp        

>NTDB_id=1002962 ABEF88_RS01890 WP_347453500.1 390919..393042(+) (pilQ) [Acinetobacter thermotolerans strain ANC 7881]
ATGAATCATGTGTTTCGTCAGTTTTCTATGGGGGCAGTTGCGATTGCAGTGATGCAGGCAGCAAGTGCACAAATCGCAAT
CACTAATGTGGTGCCAATGCAGGTTCCTGGACAAGGAACCGAAATTCGTGTGATGTTTAATGGTTTACCGCCACAGCCAC
AAGCTTATCAGCTGGAATCTCCATCACGTTTGATCCTTGATTTTGAACAGGCACAGCAGAACCTGAAACAAGGTAATATT
CCTGTTGCAACAAAAGAAGCAAATTCTGTTGATGTGTCTTCAGATGCACAACGTGCACGTTTAACCGTGAATCTGGCTGA
CGCGGGTGCATTCACGACGCGTGTAGAAGGCAACACCTTTATTTTAAAGATCAATTCTAATAGCCCAGCGGCTGTTGTTC
AGCCAGTAGTTCAACAGGCTGCTCAAGGAATTACCAATATTGGTTTCCAGCGTGGCGCTAAAGGTGAAGGACAAGTCGTC
ATTGATCTGGCGAGTGGTAATACGCCAGTTGATGTACAGCAACAAGGTACTAAAATTGTGGTTCGTGCATTAGGTAGCAA
GATCCCAGCACATTTAACCCGTCGCCTGAATGTGAATGATTTTGCCACACCGGTTTCTACTGTAGATGCAGTCAACCAAA
ATGGTTCAGGTGTGATTACCATTCAGACTTCAGATAGCTATGAATATATGGCGTATCAAACTGATAACAAGCTAACAATC
AGTTTGAAACGTCCAGAAGAGAAAAATCCATTACGTCCTAAAGCAGCACATCATTATACGGGCAAGAAAATTTCTCTAGA
TTTCCAAGATATTGAAGTTCGACGCGTATTGCAGTTGTTAGCGGACTTTACTGATATCAATATGGTCGCTGCGGATAGTG
TGCAAGGTAATATTACTTTACGTCTTAAGGAAGTACCTTGGGATCAAGCGCTGGATATCGTTTTAAAGACTAAAAATCTG
GATAAACGCCGTAATGGGAATGTCATCTGGATCGCACCAGTTACTGAACTGATTAAAGCTGAAGAAGAAGAAGCCAAAGC
ATTAGCTCAAAGTGTGAAGTTGGCTCCGATTCAGACTGAATACATTCAATTGAATTATGCGAAAGCTGCTGATATAGAAA
AACTGATCACCCAAAATAAAGGTGCTTCAAATAGTGGTAGTTCAAATTCAAACAACAATAGTGATGACAAAGAAAGCTTG
CTCAGTTCTCGTGGCTCTATTTCGATTGATGCACGTACCAATACCTTGATTGTGAATGACACCCAGCCATTTATTGATAA
AATCCGCAATATGGTGGATCTACTGGATGTTCAGGTTAAACAGGTGATGGTAGAAGCACGTATTGTTCGAGCTTCAACTG
AATTTACCAAAGAAATTGGTGTTAAATGGGGTGTTTTATCTCAAGGGATCACCAATAATAATCATCTTCTTGTAGGTGGT
AGTGATACAACTTTATGGAATTTACGTGAGCCTGAGAGGAATGATGAGTTAGGTGGTTATACCTATGAAATTGAGCGACC
ACAAAACCTGAATGTTGATTTAGGTGTAACGAATGCTGCCGGTAAAATTGCATTTGGTTTGATTAGTCTCTCGGACTTTA
TGTTGGATCTTGAACTTTCTGCACTACAAGCAGATGGTTATGGAGAGGTGATTTCAACACCGAAAGTACTTACAGCAGAT
AAGCAAAAAGCTACTGTTGAATCAGGTTTTGAAGTGCCATATCAGTCGACTGAGGGAAGTGGTGCTAGCGCAACAGCTAC
AACTGAATTTAAGGATGTGGTACTTAAGCTGGATGTGACTCCAAGCATTACGCCTGATGGAAAAGTGCAAATGGACCTGG
ATATTTCCAGTGACAGTATCGCTGGGGTAACACCAATGGGTGAATACTATCTCAATAAAAACCGTCTGAACACGAATGTT
CTAGTTGAAAATGGTGAGACAGTAGTACTCGGTGGTATTTTTGAACAAGAAAATCTTAATCAGCAAACTAAAGTGCCTTT
CTTGGGAGATATTCCATATTTAGGTCGTTTATTCCGTAAGGATACCAAGTCTGATAATAAACGTGAGCTCCTGATTTTTG
TTACACCACGAATTGTTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(291-333)

Bacterial type II/III secretion system short domain (Secretin_N)

(360-441)

Bacterial type II and III secretion system protein (Secretin)

(541-699)

AMIN domain (AMIN)

(39-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

74.341

100

0.758
  pilQ Acinetobacter baumannii strain A118

74.202

100

0.757
  comQ Acinetobacter baylyi ADP1

70.139

100

0.714
  pilQ Pseudomonas aeruginosa PAK

42.346

98.868

0.419
  pilQ Legionella pneumophila strain ERS1305867

38.129

98.303

0.375
  pilQ Legionella pneumophila strain Lp02

38.129

98.303

0.375
  pilQ Neisseria gonorrhoeae strain FA1090

34.6

100

0.361

Multiple sequence alignment