Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   ABEF88_RS01880 Genome accession   NZ_CP156804
Coordinates   389611..390330 (+) Length   239 a.a.
NCBI ID   WP_404798961.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7881     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 384611..395330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF88_RS01865 (ABEF88_01865) ponA 385214..387745 (-) 2532 WP_347453498.1 penicillin-binding protein PBP1a -
  ABEF88_RS01870 (ABEF88_01870) pilM 387912..388970 (+) 1059 WP_034585542.1 pilus assembly protein PilM Machinery gene
  ABEF88_RS01875 (ABEF88_01875) pilN 388970..389614 (+) 645 WP_347453499.1 PilN domain-containing protein Machinery gene
  ABEF88_RS01880 (ABEF88_01880) comO 389611..390330 (+) 720 WP_404798961.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF88_RS01885 (ABEF88_01885) pilP 390330..390857 (+) 528 WP_034585535.1 pilus assembly protein PilP Machinery gene
  ABEF88_RS01890 (ABEF88_01890) pilQ 390919..393042 (+) 2124 WP_347453500.1 type IV pilus secretin PilQ family protein Machinery gene
  ABEF88_RS01895 (ABEF88_01895) aroK 393079..393615 (+) 537 WP_347453501.1 shikimate kinase AroK -
  ABEF88_RS01900 (ABEF88_01900) aroB 393643..394722 (+) 1080 WP_347453502.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 27008.54 Da        Isoelectric Point: 4.6463

>NTDB_id=1002960 ABEF88_RS01880 WP_404798961.1 389611..390330(+) (comO) [Acinetobacter thermotolerans strain ANC 7881]
MSEQFEDLGQEPVVAPKNKMTVEKFFQQFNTLDPNNYGSWPIAVKITCWIFIVFVVMMLAYFGLIRGQIEAIAQANAQEQ
NLLNEFRDKDSKLRNLQQYQQQLQEMEARFNQQLEQLPKETEIPGLVEDINLSGVNAGLKFKNIRLEPEVKQEFFIEQPI
SIEATGDYHSFGSFVSGIAGLSRIVTLHDFEITGTANKEKKTDIPVIDYVVKAKTYRYVGNANTNSTADNTAANGQGAQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=1002960 ABEF88_RS01880 WP_404798961.1 389611..390330(+) (comO) [Acinetobacter thermotolerans strain ANC 7881]
ATGAGCGAACAATTTGAAGATTTAGGTCAAGAGCCAGTTGTTGCACCGAAAAATAAAATGACGGTGGAGAAGTTTTTCCA
GCAGTTTAATACCCTGGATCCAAATAATTATGGTAGCTGGCCGATCGCAGTTAAAATTACCTGCTGGATTTTTATTGTCT
TTGTGGTAATGATGCTGGCTTATTTTGGTTTGATCCGCGGCCAAATCGAAGCCATTGCACAAGCGAATGCTCAGGAGCAA
AACTTGCTCAATGAGTTCCGTGATAAGGATTCCAAGCTGCGTAACTTGCAACAATATCAGCAACAATTGCAGGAAATGGA
AGCACGTTTTAACCAGCAACTCGAGCAGTTGCCGAAAGAAACAGAAATTCCTGGATTGGTTGAAGATATTAACTTGAGCG
GTGTCAACGCCGGCCTGAAGTTCAAAAATATCCGTCTTGAACCTGAAGTGAAGCAGGAATTCTTTATTGAGCAACCGATC
TCGATTGAAGCAACAGGTGATTATCATTCTTTTGGTTCATTTGTTAGTGGTATTGCAGGTCTGTCACGTATCGTGACACT
GCATGATTTTGAAATTACTGGTACGGCAAACAAAGAGAAGAAAACTGATATTCCAGTGATTGATTATGTGGTGAAAGCAA
AAACTTATCGCTATGTAGGAAACGCTAATACTAATAGTACAGCAGATAATACAGCTGCAAACGGTCAGGGGGCACAGTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(72-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

66.805

100

0.674
  pilO Acinetobacter baumannii D1279779

69.058

93.305

0.644

Multiple sequence alignment