Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABEF88_RS01875 Genome accession   NZ_CP156804
Coordinates   388970..389614 (+) Length   214 a.a.
NCBI ID   WP_347453499.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7881     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 383970..394614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF88_RS01865 (ABEF88_01865) ponA 385214..387745 (-) 2532 WP_347453498.1 penicillin-binding protein PBP1a -
  ABEF88_RS01870 (ABEF88_01870) pilM 387912..388970 (+) 1059 WP_034585542.1 pilus assembly protein PilM Machinery gene
  ABEF88_RS01875 (ABEF88_01875) pilN 388970..389614 (+) 645 WP_347453499.1 PilN domain-containing protein Machinery gene
  ABEF88_RS01880 (ABEF88_01880) comO 389611..390330 (+) 720 WP_404798961.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABEF88_RS01885 (ABEF88_01885) pilP 390330..390857 (+) 528 WP_034585535.1 pilus assembly protein PilP Machinery gene
  ABEF88_RS01890 (ABEF88_01890) pilQ 390919..393042 (+) 2124 WP_347453500.1 type IV pilus secretin PilQ family protein Machinery gene
  ABEF88_RS01895 (ABEF88_01895) aroK 393079..393615 (+) 537 WP_347453501.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23990.23 Da        Isoelectric Point: 4.7839

>NTDB_id=1002959 ABEF88_RS01875 WP_347453499.1 388970..389614(+) (pilN) [Acinetobacter thermotolerans strain ANC 7881]
MAKINLLPWRDELRVKRNNEFIAYCVGALLLGVTAAGGGWFYYDQKLQDQEQANQLIISTNQNLDVQLKSLDGLQEQRDA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSDMYVTKFVRTGDKFTIEGKAASPNTVAELLRNLEASPWYRNAFMNSFLA
AEEKKDKAPSSLIPRIEESYGTFTVTVDLDQIAQPVLSEQQPQAAETTTQGATS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=1002959 ABEF88_RS01875 WP_347453499.1 388970..389614(+) (pilN) [Acinetobacter thermotolerans strain ANC 7881]
ATGGCAAAAATTAACCTATTGCCTTGGCGTGATGAGCTAAGAGTCAAAAGAAATAATGAATTTATCGCATATTGCGTAGG
GGCTTTGTTGCTCGGTGTAACAGCAGCAGGGGGCGGCTGGTTCTATTACGATCAAAAATTACAGGATCAGGAACAGGCCA
ATCAACTTATCATTAGTACCAACCAGAATCTGGATGTGCAGCTGAAATCACTCGATGGTTTGCAAGAGCAGCGTGATGCG
ATTGTCGAGCGTATGAAACTGATTCAGGGCTTGCAAACCCAGCGTCCGATTGCGGTGCATCTGATTGATGAAATTGTGCG
GGTAACGCCAAGTGATATGTATGTCACCAAGTTTGTACGTACCGGGGATAAGTTCACGATTGAAGGCAAGGCTGCAAGTC
CAAATACCGTGGCAGAGTTGCTTCGTAATTTGGAAGCCTCTCCTTGGTATCGCAATGCATTTATGAATTCGTTCCTGGCA
GCGGAAGAGAAGAAGGACAAAGCACCAAGTTCTCTGATTCCGCGTATTGAAGAGTCTTATGGAACGTTCACAGTAACTGT
TGATCTTGACCAGATTGCTCAGCCTGTGCTTTCCGAGCAGCAACCACAGGCAGCTGAGACAACTACACAGGGGGCGACAT
CATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

75.648

90.187

0.682
  comN Acinetobacter baylyi ADP1

69.565

96.729

0.673

Multiple sequence alignment