Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABEF84_RS01480 Genome accession   NZ_CP156795
Coordinates   307103..308335 (-) Length   410 a.a.
NCBI ID   WP_034587521.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7912     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 302103..313335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF84_RS01455 (ABEF84_01455) - 303423..303746 (+) 324 WP_034587531.1 pyrimidine/purine nucleoside phosphorylase -
  ABEF84_RS01460 (ABEF84_01460) rlmB 303899..304648 (+) 750 WP_034587529.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABEF84_RS01465 (ABEF84_01465) - 304682..305602 (+) 921 WP_034587527.1 DMT family transporter -
  ABEF84_RS01470 (ABEF84_01470) coaE 305627..306226 (-) 600 WP_034587525.1 dephospho-CoA kinase -
  ABEF84_RS01475 (ABEF84_01475) pilD 306231..307088 (-) 858 WP_034587523.1 A24 family peptidase Machinery gene
  ABEF84_RS01480 (ABEF84_01480) pilC 307103..308335 (-) 1233 WP_034587521.1 type II secretion system F family protein Machinery gene
  ABEF84_RS01485 (ABEF84_01485) pilB 308367..310076 (-) 1710 WP_347473740.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABEF84_RS01490 (ABEF84_01490) tpiA 310359..311150 (+) 792 WP_347473741.1 triose-phosphate isomerase -
  ABEF84_RS01495 (ABEF84_01495) secG 311164..311493 (+) 330 WP_034587516.1 preprotein translocase subunit SecG -
  ABEF84_RS01525 (ABEF84_01525) rimP 312444..312968 (+) 525 WP_034587514.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45213.92 Da        Isoelectric Point: 9.9407

>NTDB_id=1002873 ABEF84_RS01480 WP_034587521.1 307103..308335(-) (pilC) [Acinetobacter thermotolerans strain ANC 7912]
MASVKKGQMMPTFLYEGVDRKGVKIKGEMPARNLALAKVTLRKQGISIKSIREKKKNILEGLMKKRVTTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVALY
KEKSELLKQKIKKAMKYPISVIIVAIIVTIILMVKVVPVFEELFAGFGADLPAFTKMVVAMSKWMQAYWFLLIIFIGIVI
TTFLEAKKRSKKFRDFLDKTALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVAIGEESGALDAMLEKVATHYENEVDNAVDGLTSMMEPLIMSVLGILVGGLVIAMYL
PIFQMGSIVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=1002873 ABEF84_RS01480 WP_034587521.1 307103..308335(-) (pilC) [Acinetobacter thermotolerans strain ANC 7912]
ATGGCTTCAGTGAAAAAAGGTCAGATGATGCCAACCTTCCTTTATGAAGGGGTAGACCGCAAAGGGGTTAAAATTAAAGG
TGAAATGCCAGCACGCAACCTGGCCTTAGCCAAGGTGACACTGCGTAAGCAGGGCATTAGTATCAAGAGTATTCGAGAGA
AAAAGAAGAATATTCTTGAAGGTTTAATGAAGAAACGAGTTACCACACTAGACATCACGATTTTTACCCGACAACTAGCA
ACCATGATGAAAGCAGGTGTACCTTTGGTACAGGGTTTTGAAATCGTCGCCGAGGGTCTAGAAAACCCTGCTATGCGCGA
AGTAGTACTTGGCATTAAAGGTGAAGTTGAAGGGGGTAATACCTTTGCTGGCGCACTGCGTAAATACCCACAATATTTCG
ACAAACTGTTCTGTTCACTGGTGGAATCCGGTGAACAATCTGGTGCGCTGGAAACCATGCTAGATCGGGTAGCCCTATAT
AAAGAAAAAAGTGAGCTATTAAAACAGAAAATTAAAAAAGCGATGAAATACCCAATATCGGTAATCATTGTTGCAATTAT
TGTAACTATCATTCTGATGGTCAAAGTTGTTCCAGTTTTTGAAGAGCTGTTTGCTGGTTTCGGTGCTGACCTACCCGCTT
TTACTAAGATGGTAGTAGCCATGTCTAAATGGATGCAAGCTTATTGGTTCCTTTTGATTATTTTTATCGGAATTGTGATT
ACAACTTTTCTAGAAGCCAAAAAACGCAGCAAAAAATTCCGTGATTTTCTCGATAAAACAGCTCTTAAAGCCCCCATTTT
TGGCGATCTAGTTTATAAAGCAATTATTGCCCGTTATAGTCGCACCTTAGCAACGACTTTTGCTGCCGGTGTACCGCTCA
TTGATGCTTTAGAATCTACTGCAGGGGCTACCAATAACGTGGTCTATGAAGAAGCAGTGATGAAAATCCGTGAAGACGTT
GCCACTGGTCAGCAACTGCAATTTGCGATGCGTGTCACCAATAAATTCCCATCGATGGCAGTACAGATGGTTGCCATTGG
CGAAGAATCTGGTGCACTGGATGCCATGTTGGAGAAAGTGGCTACCCATTATGAAAATGAAGTCGATAATGCTGTCGATG
GTTTAACATCAATGATGGAACCATTAATCATGTCTGTTTTAGGTATTTTAGTTGGTGGCTTAGTCATTGCGATGTATCTT
CCTATTTTCCAAATGGGTTCTATTGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

87.469

99.268

0.868
  pilC Acinetobacter baylyi ADP1

80.835

99.268

0.802
  pilC Pseudomonas stutzeri DSM 10701

60.804

97.073

0.59
  pilC Legionella pneumophila strain ERS1305867

54.774

97.073

0.532
  pilG Neisseria meningitidis 44/76-A

46.985

97.073

0.456
  pilG Neisseria gonorrhoeae MS11

46.985

97.073

0.456
  pilC Vibrio cholerae strain A1552

43.521

99.756

0.434
  pilC Vibrio campbellii strain DS40M4

41.294

98.049

0.405
  pilC Thermus thermophilus HB27

37.037

98.78

0.366

Multiple sequence alignment