Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   EL222_RS06200 Genome accession   NZ_LR134500
Coordinates   1175996..1176862 (-) Length   288 a.a.
NCBI ID   WP_002858085.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NCTC13261     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1170996..1181862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL222_RS06180 (NCTC13261_01254) metF 1172849..1173697 (+) 849 WP_002858469.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  EL222_RS06185 - 1173719..1173910 (-) 192 WP_002852856.1 membrane protein -
  EL222_RS06190 (NCTC13261_01255) atpB 1173907..1174587 (-) 681 WP_002858390.1 F0F1 ATP synthase subunit A -
  EL222_RS06195 (NCTC13261_01256) radA 1174656..1175996 (-) 1341 WP_002858434.1 DNA repair protein RadA Machinery gene
  EL222_RS06200 (NCTC13261_01257) pilA 1175996..1176862 (-) 867 WP_002858085.1 signal recognition particle-docking protein FtsY Machinery gene
  EL222_RS06205 (NCTC13261_01258) - 1176862..1177419 (-) 558 WP_002858112.1 TlpA disulfide reductase family protein -
  EL222_RS06210 - 1177502..1178128 (+) 627 WP_002875342.1 5-formyltetrahydrofolate cyclo-ligase -
  EL222_RS06215 (NCTC13261_01259) rny 1178049..1179602 (+) 1554 WP_002858133.1 ribonuclease Y -
  EL222_RS06220 (NCTC13261_01260) - 1179611..1180168 (+) 558 WP_002856055.1 DedA family protein -
  EL222_RS06225 (NCTC13261_01261) - 1180168..1181427 (+) 1260 WP_002873165.1 ComEC/Rec2 family competence protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 32022.00 Da        Isoelectric Point: 5.5179

>NTDB_id=1002873 EL222_RS06200 WP_002858085.1 1175996..1176862(-) (pilA) [Campylobacter jejuni strain NCTC13261]
MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEIVEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQ
EKPFVELILGVNGAGKTTSIAKLAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGILQAKAFNELVKLDGVIITKLDG
TAKGGALFSIARELELPIFYVGVGEQMTDLQEFNASAYLDTLLDPIFE

Nucleotide


Download         Length: 867 bp        

>NTDB_id=1002873 EL222_RS06200 WP_002858085.1 1175996..1176862(-) (pilA) [Campylobacter jejuni strain NCTC13261]
ATGTTTAATTTTTTTAAAAAAGGACTTGCAAAAACTCTTGAAAATATTGTTGGAGTTAAAGGAGAGAATAAAAAGATAAC
CAAAGATTTGCTTGAAGAAATTTTGCTTGAAGCAGATGTAAGTTATGAAATAGTTGAAGAGATAATTTATTATTTACCAC
CTCAAAATGAAGTAAAAAAAGAAGATTTAAAGCGTGTTATGGGTTCTTATTTTCTTTATGAAAAAAAAGAAACCAATCAA
GAAAAACCTTTTGTAGAGCTTATTTTAGGAGTAAATGGAGCAGGAAAAACAACAAGTATTGCCAAGCTTGCTTATTTATA
CAAAAACCAAAATCAAAAAGTGATTTTAGGAGCGTGTGATACTTTTAGAGCAGGTGCGATTGAGCAATTAAAACTTTGGG
CGCAAAAAGTGGATGTAGATATAGTTTTAACTGCACAAGGGCATGATCCTTCAGCGGTTGCTTTTGATACCATTTCTAAA
GCAAAAGCAAAGGATTTTGATAGAGTTATTATCGATACAGCAGGGCGTTTGCAAAATCAAAAAAATTTAGCTCATGAGCT
TGAAAAAATTGTAAGAATTTCAAACAAAGCTTTAGAAGGCGCACCCCATAGAAAAATTTTAGTTTTAGATGGAACACAGG
GAAATGCTGGAATTTTACAAGCTAAAGCTTTTAATGAGCTTGTAAAACTTGATGGTGTGATTATCACAAAGCTTGATGGG
ACAGCTAAAGGGGGTGCACTTTTTAGTATAGCAAGAGAGCTTGAGCTTCCTATTTTTTATGTAGGCGTGGGTGAGCAAAT
GACGGATTTACAAGAATTTAATGCAAGTGCTTATTTAGATACTTTATTAGATCCTATTTTTGAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(84-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

41.584

100

0.437

Multiple sequence alignment