Detailed information NTG1002872

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ABEF84_RS01475
• Genome accession: NZ_CP156795
• Coordinates: 306231..307088 (-)
• Length: 285 a.a.
• NCBI ID: WP_034587523.1
• Uniprot ID: A0A0A3W448
• Organism: Acinetobacter thermotolerans strain ANC 7912
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 301231..312088

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABEF84_RS01450 (ABEF84_01450)	recN	301348..303009 (-)	1662	WP_347473739.1	DNA repair protein RecN	-
ABEF84_RS01455 (ABEF84_01455)	-	303423..303746 (+)	324	WP_034587531.1	pyrimidine/purine nucleoside phosphorylase	-
ABEF84_RS01460 (ABEF84_01460)	rlmB	303899..304648 (+)	750	WP_034587529.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ABEF84_RS01465 (ABEF84_01465)	-	304682..305602 (+)	921	WP_034587527.1	DMT family transporter	-
ABEF84_RS01470 (ABEF84_01470)	coaE	305627..306226 (-)	600	WP_034587525.1	dephospho-CoA kinase	-
ABEF84_RS01475 (ABEF84_01475)	pilD	306231..307088 (-)	858	WP_034587523.1	A24 family peptidase	Machinery gene
ABEF84_RS01480 (ABEF84_01480)	pilC	307103..308335 (-)	1233	WP_034587521.1	type II secretion system F family protein	Machinery gene
ABEF84_RS01485 (ABEF84_01485)	pilB	308367..310076 (-)	1710	WP_347473740.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABEF84_RS01490 (ABEF84_01490)	tpiA	310359..311150 (+)	792	WP_347473741.1	triose-phosphate isomerase	-
ABEF84_RS01495 (ABEF84_01495)	secG	311164..311493 (+)	330	WP_034587516.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 31766.05 Da
• Isoelectric Point: 8.0605

>NTDB_id=1002872 ABEF84_RS01475 WP_034587523.1 306231..307088(-) (pilD) [Acinetobacter thermotolerans strain ANC 7912]
MNSLIDFLIQNPTALYIAVGLFSLCIGSFLNVVIYRTPKMMEQEWRTDCQLFLHPDQPIIDESKITLSKPASTCPKCQTP
IRWYQNIPVISWLALRGKCGSCHTQISARYPFIEILTAVCALIILAVFGPTVQMLFGLLLTYVLIALTFIDFDTQLLPDR
FTLPLAALGLGINSYSIYTSPSSAIWGYIIGFLCLWLVYYLFKIITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
VGAIIGIILLKVRKENQPFAFGPYIAIAGWIAFLWGEQIMKAYLG

Nucleotide

• Length: 858 bp

>NTDB_id=1002872 ABEF84_RS01475 WP_034587523.1 306231..307088(-) (pilD) [Acinetobacter thermotolerans strain ANC 7912]
TTGAATAGTTTAATTGATTTTTTAATTCAAAACCCGACTGCGCTCTATATCGCAGTTGGGCTTTTTAGCCTCTGTATCGG
CAGTTTTCTGAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAGGAATGGCGAACCGATTGCCAGCTGTTTTTAC
ATCCAGATCAGCCGATCATTGATGAAAGCAAAATCACTCTAAGCAAACCAGCATCCACTTGTCCGAAATGCCAGACACCT
ATCCGCTGGTACCAGAATATTCCTGTGATCAGCTGGCTAGCTTTACGCGGAAAATGTGGCTCCTGCCATACTCAGATAAG
TGCCCGTTATCCGTTTATTGAGATTCTGACAGCAGTATGTGCACTCATCATTTTGGCAGTCTTTGGCCCAACCGTACAGA
TGCTGTTTGGACTACTACTGACTTATGTGTTGATTGCATTAACCTTTATCGACTTCGATACACAGCTCCTACCAGATCGC
TTTACCCTGCCACTCGCTGCACTGGGTCTAGGGATTAATAGCTACAGTATTTATACCTCACCCTCTTCAGCGATCTGGGG
GTATATTATTGGTTTTCTGTGCCTTTGGCTCGTGTATTACCTGTTCAAGATCATTACAGGGAAAGAAGGTATGGGCTATG
GTGACTTTAAGCTCTTGGCTGCGCTAGGTGCTTGGATGGGTCCACTGATGCTACCGCTGATCGTATTGCTATCCTCACTG
GTCGGTGCCATTATCGGCATCATCCTATTAAAAGTCCGCAAGGAAAATCAGCCTTTTGCTTTTGGTCCCTATATCGCCAT
TGCCGGCTGGATTGCTTTCCTTTGGGGTGAACAGATCATGAAAGCATATTTGGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-127)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

3D structure

• AlphaFold DB: A0A0A3W448

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	80	100	0.8
pilD	Acinetobacter nosocomialis M2	79.649	100	0.796
pilD	Vibrio cholerae strain A1552	56.18	93.684	0.526
pilD	Vibrio campbellii strain DS40M4	53.184	93.684	0.498
pilD	Neisseria gonorrhoeae MS11	46.953	97.895	0.46