Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABEF85_RS13805 Genome accession   NZ_CP156776
Coordinates   2831327..2832556 (+) Length   409 a.a.
NCBI ID   WP_347456717.1    Uniprot ID   -
Organism   Acinetobacter thermotolerans strain ANC 7955     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2826327..2837556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEF85_RS13760 (ABEF85_13760) rimP 2826693..2827217 (-) 525 WP_034587514.1 ribosome maturation factor RimP -
  ABEF85_RS13790 (ABEF85_13790) secG 2828168..2828497 (-) 330 WP_347453474.1 preprotein translocase subunit SecG -
  ABEF85_RS13795 (ABEF85_13795) tpiA 2828511..2829302 (-) 792 WP_347453473.1 triose-phosphate isomerase -
  ABEF85_RS13800 (ABEF85_13800) pilB 2829586..2831295 (+) 1710 WP_347453472.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABEF85_RS13805 (ABEF85_13805) pilC 2831327..2832556 (+) 1230 WP_347456717.1 type II secretion system F family protein Machinery gene
  ABEF85_RS13810 (ABEF85_13810) pilD 2832556..2833416 (+) 861 WP_347456716.1 A24 family peptidase Machinery gene
  ABEF85_RS13815 (ABEF85_13815) coaE 2833418..2834017 (+) 600 WP_347453469.1 dephospho-CoA kinase -
  ABEF85_RS13820 (ABEF85_13820) - 2834042..2834962 (-) 921 WP_347453468.1 DMT family transporter -
  ABEF85_RS13825 (ABEF85_13825) rlmB 2834999..2835748 (-) 750 WP_347453467.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABEF85_RS13830 (ABEF85_13830) - 2835901..2836224 (-) 324 WP_034587531.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 45158.75 Da        Isoelectric Point: 9.9407

>NTDB_id=1002650 ABEF85_RS13805 WP_347456717.1 2831327..2832556(+) (pilC) [Acinetobacter thermotolerans strain ANC 7955]
MASVKKGQMMPTFLYEGVDRKGVKIKGEMPARNLALAKVTLRKQGISIKSIREKKKNILEGLMKKRVTTLDITIFTRQLA
TMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGNTFAGALRKYPQYFDKLFCSLVESGEQSGALETMLDRVAVY
KEKSELLKQKIKKAMKYPATVIVVAVIVTIILMVKVVPVFEELFTSFGADLPAFTKMVVNMSQWMQKYWFLLIIFIGIVI
TAFLEAKKRSKKFRDFLDKAALKAPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDV
ATGQQLQFAMRVTNKFPSMAVQMVSIGEESGALDAMLDKVATHYENEVDNAVDGLTSMMEPLIMAILGILVGGLVVAMYL
PIFQMGSVV

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=1002650 ABEF85_RS13805 WP_347456717.1 2831327..2832556(+) (pilC) [Acinetobacter thermotolerans strain ANC 7955]
ATGGCTTCAGTGAAAAAAGGTCAGATGATGCCAACCTTCCTTTATGAAGGGGTAGACCGCAAAGGGGTTAAAATTAAAGG
TGAAATGCCAGCACGCAACCTGGCTTTGGCCAAGGTGACACTGCGTAAGCAAGGCATCAGCATTAAGAGTATTCGAGAGA
AAAAGAAGAATATTCTTGAAGGTTTGATGAAAAAAAGAGTCACCACACTGGATATCACTATTTTTACTCGTCAGCTAGCA
ACCATGATGAAAGCCGGTGTACCGCTGGTACAAGGTTTTGAAATCGTCGCTGAAGGTCTGGAAAATCCAGCCATGCGTGA
AGTGGTACTTGGAATTAAAGGTGAAGTTGAAGGGGGTAATACTTTTGCGGGAGCATTACGTAAATACCCGCAATATTTTG
ACAAGTTGTTCTGCTCTCTAGTTGAATCCGGTGAACAGTCCGGTGCGCTGGAAACCATGCTGGATCGGGTTGCAGTCTAT
AAAGAAAAGAGTGAACTGTTAAAGCAAAAAATTAAAAAAGCCATGAAATACCCGGCGACCGTTATTGTGGTGGCGGTTAT
CGTCACTATTATTCTAATGGTTAAAGTCGTTCCGGTATTTGAAGAGCTATTCACTTCTTTTGGTGCTGACCTACCCGCTT
TCACTAAGATGGTCGTGAATATGTCACAATGGATGCAGAAATACTGGTTCCTGTTAATTATCTTTATCGGTATTGTGATT
ACAGCTTTTCTGGAAGCCAAAAAACGCAGCAAAAAATTCCGTGATTTTCTGGATAAAGCAGCACTCAAAGCCCCAATCTT
TGGTGATCTGGTCTACAAGGCAATTATTGCCCGTTACAGTCGTACTTTGGCTACTACATTTGCTGCTGGTGTACCATTGA
TTGATGCACTGGAATCTACTGCTGGTGCAACCAATAACGTAGTCTATGAAGAAGCGGTAATGAAAATCCGTGAAGATGTC
GCAACCGGTCAGCAACTACAATTCGCCATGCGTGTCACTAACAAATTCCCATCTATGGCAGTACAAATGGTTTCTATTGG
TGAAGAATCTGGTGCGCTAGATGCCATGTTGGATAAAGTCGCGACTCACTATGAAAACGAAGTCGATAATGCTGTTGATG
GTTTAACTTCGATGATGGAACCTTTGATTATGGCCATCCTAGGTATTTTAGTTGGTGGTCTGGTTGTGGCCATGTATCTA
CCAATCTTCCAGATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)

Type II secretion system (T2SS), protein F (T2SSF)

(280-401)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.698

99.511

0.883
  pilC Acinetobacter baylyi ADP1

82.801

99.511

0.824
  pilC Pseudomonas stutzeri DSM 10701

60.302

97.311

0.587
  pilC Legionella pneumophila strain ERS1305867

54.271

97.311

0.528
  pilG Neisseria meningitidis 44/76-A

47.236

97.311

0.46
  pilG Neisseria gonorrhoeae MS11

47.236

97.311

0.46
  pilC Vibrio cholerae strain A1552

43.382

99.756

0.433
  pilC Vibrio campbellii strain DS40M4

41.728

99.022

0.413
  pilC Thermus thermophilus HB27

37.284

99.022

0.369

Multiple sequence alignment