Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABFT82_RS21775 Genome accession   NZ_CP156749
Coordinates   4396781..4397998 (-) Length   405 a.a.
NCBI ID   WP_347505898.1    Uniprot ID   -
Organism   Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4391781..4402998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFT82_RS21735 (ABFT82_21735) - 4392424..4392597 (-) 174 WP_090381681.1 DUF3094 family protein -
  ABFT82_RS21740 (ABFT82_21740) - 4392679..4393173 (-) 495 WP_347505896.1 MOSC domain-containing protein -
  ABFT82_RS21745 (ABFT82_21745) - 4393170..4393799 (-) 630 WP_160013159.1 DUF1780 domain-containing protein -
  ABFT82_RS21750 (ABFT82_21750) - 4393933..4394622 (+) 690 WP_090381696.1 energy-coupling factor ABC transporter permease -
  ABFT82_RS21755 (ABFT82_21755) - 4394727..4394942 (+) 216 WP_090381702.1 hypothetical protein -
  ABFT82_RS21760 (ABFT82_21760) yacG 4394946..4395146 (-) 201 WP_090381707.1 DNA gyrase inhibitor YacG -
  ABFT82_RS21765 (ABFT82_21765) coaE 4395143..4395757 (-) 615 WP_090381713.1 dephospho-CoA kinase -
  ABFT82_RS21770 (ABFT82_21770) pilD 4395908..4396777 (-) 870 WP_347505897.1 A24 family peptidase Machinery gene
  ABFT82_RS21775 (ABFT82_21775) pilC 4396781..4397998 (-) 1218 WP_347505898.1 type II secretion system F family protein Machinery gene
  ABFT82_RS21780 (ABFT82_21780) pilB 4398002..4399705 (-) 1704 WP_347505899.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFT82_RS21785 (ABFT82_21785) pilA2 4399927..4400361 (+) 435 WP_347505901.1 pilin Machinery gene
  ABFT82_RS21790 (ABFT82_21790) - 4400417..4402348 (+) 1932 WP_347505902.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43786.49 Da        Isoelectric Point: 10.0658

>NTDB_id=1002533 ABFT82_RS21775 WP_347505898.1 4396781..4397998(-) (pilC) [Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass]
MAVKALKTSTFAWEGTNKQGAKIKGEASGQNPALVKAQLRKQGINPTKVRKKSASLFSAGKKIKPMDIALFARQMATMMK
AGVPLLQSFDIIAEGVDNPNMRKLVDDIKQHVAAGNSFAAALRTRPEYFDELFCNLVDAGEQAGALENLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAVIVSAILLIKVVPQFESVFANFGAELPAFTQFVIGISQALQKWWFIILIGMLATAFAFA
ETKKRSEKFRNWLDRTALKAPIVGDIIYKSSVARYARTLATTFAAGVPLVEALDSVAGATGNIVFKNAVNKIKQDVSAGM
QLNFSMRSTGVFPSMAIQMTAIGEESGALDMMLDKVASYYEAEVDNAVDGLTSLMEPLIMSVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1002533 ABFT82_RS21775 WP_347505898.1 4396781..4397998(-) (pilC) [Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass]
ATGGCCGTTAAAGCACTAAAAACCAGTACCTTCGCCTGGGAGGGCACCAATAAACAAGGTGCCAAAATAAAAGGCGAGGC
TAGCGGCCAGAACCCCGCACTGGTAAAGGCGCAACTGCGCAAACAGGGCATTAACCCGACCAAGGTGCGCAAAAAATCTG
CCTCACTGTTCAGTGCCGGAAAAAAAATCAAACCAATGGACATCGCGCTGTTTGCACGGCAGATGGCCACCATGATGAAG
GCCGGCGTACCACTGTTACAATCCTTTGACATTATTGCCGAGGGCGTAGACAACCCTAATATGCGCAAGCTGGTTGATGA
CATCAAACAGCACGTTGCGGCTGGTAATAGCTTTGCGGCTGCCCTCAGAACTCGTCCAGAATACTTTGATGAGCTGTTCT
GCAACCTGGTGGATGCAGGGGAGCAAGCAGGTGCCCTGGAAAACCTGCTGGACCGAGTTGCGACCTACAAAGAAAAGACC
GAAGCGCTTAAAGCAAAAATCAAAAAAGCAATGAACTACCCCATTGCGGTGGTGCTGGTGGCGGTCATTGTTTCGGCTAT
TTTGTTGATCAAAGTAGTGCCGCAATTTGAATCTGTATTTGCCAACTTTGGCGCTGAACTCCCAGCATTTACGCAGTTTG
TAATCGGCATATCTCAGGCCCTGCAAAAGTGGTGGTTCATCATCTTGATTGGCATGCTTGCCACAGCCTTTGCTTTTGCT
GAAACCAAGAAGCGTTCGGAGAAATTCCGTAACTGGCTCGACCGAACAGCACTGAAAGCACCGATTGTAGGTGACATCAT
CTACAAATCCTCCGTTGCGCGTTACGCCCGCACCCTGGCAACCACATTTGCAGCTGGCGTACCACTGGTGGAGGCGCTGG
ACTCTGTAGCTGGCGCCACCGGCAATATCGTGTTCAAGAATGCGGTGAATAAAATCAAGCAGGATGTCAGTGCCGGTATG
CAGCTGAACTTCTCCATGCGCAGCACCGGAGTATTCCCCTCAATGGCCATCCAAATGACCGCCATTGGTGAAGAGTCCGG
GGCACTGGATATGATGCTGGATAAAGTCGCCAGCTATTACGAGGCTGAAGTTGATAACGCGGTAGATGGCCTGACCAGCT
TGATGGAGCCGCTGATTATGTCGGTACTTGGCGTTCTTGTCGGCGGCCTGATCATTGCCATGTACCTGCCTATCTTCCAG
CTGGGTGCTGTTGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

80.247

100

0.802
  pilC Acinetobacter baumannii D1279779

61.275

100

0.617
  pilC Acinetobacter baylyi ADP1

60.957

98.025

0.598
  pilC Legionella pneumophila strain ERS1305867

54.156

98.025

0.531
  pilG Neisseria gonorrhoeae MS11

44.279

99.259

0.44
  pilG Neisseria meningitidis 44/76-A

44.279

99.259

0.44
  pilC Vibrio cholerae strain A1552

42.222

100

0.422
  pilC Vibrio campbellii strain DS40M4

40.909

97.778

0.4

Multiple sequence alignment