Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ABFT82_RS21770 | Genome accession | NZ_CP156749 |
| Coordinates | 4395908..4396777 (-) | Length | 289 a.a. |
| NCBI ID | WP_347505897.1 | Uniprot ID | - |
| Organism | Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4390908..4401777
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABFT82_RS21730 (ABFT82_21730) | - | 4391071..4392360 (-) | 1290 | WP_347505895.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| ABFT82_RS21735 (ABFT82_21735) | - | 4392424..4392597 (-) | 174 | WP_090381681.1 | DUF3094 family protein | - |
| ABFT82_RS21740 (ABFT82_21740) | - | 4392679..4393173 (-) | 495 | WP_347505896.1 | MOSC domain-containing protein | - |
| ABFT82_RS21745 (ABFT82_21745) | - | 4393170..4393799 (-) | 630 | WP_160013159.1 | DUF1780 domain-containing protein | - |
| ABFT82_RS21750 (ABFT82_21750) | - | 4393933..4394622 (+) | 690 | WP_090381696.1 | energy-coupling factor ABC transporter permease | - |
| ABFT82_RS21755 (ABFT82_21755) | - | 4394727..4394942 (+) | 216 | WP_090381702.1 | hypothetical protein | - |
| ABFT82_RS21760 (ABFT82_21760) | yacG | 4394946..4395146 (-) | 201 | WP_090381707.1 | DNA gyrase inhibitor YacG | - |
| ABFT82_RS21765 (ABFT82_21765) | coaE | 4395143..4395757 (-) | 615 | WP_090381713.1 | dephospho-CoA kinase | - |
| ABFT82_RS21770 (ABFT82_21770) | pilD | 4395908..4396777 (-) | 870 | WP_347505897.1 | A24 family peptidase | Machinery gene |
| ABFT82_RS21775 (ABFT82_21775) | pilC | 4396781..4397998 (-) | 1218 | WP_347505898.1 | type II secretion system F family protein | Machinery gene |
| ABFT82_RS21780 (ABFT82_21780) | pilB | 4398002..4399705 (-) | 1704 | WP_347505899.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ABFT82_RS21785 (ABFT82_21785) | pilA2 | 4399927..4400361 (+) | 435 | WP_347505901.1 | pilin | Machinery gene |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 31865.95 Da Isoelectric Point: 6.6216
>NTDB_id=1002532 ABFT82_RS21770 WP_347505897.1 4395908..4396777(-) (pilD) [Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass]
MSVIDFLASHVLAFVLCALLIGLLVGSFLNVLIYRLPKMMQREWREQAREILELSTEAPAATFNLVLPNSSCPHCAHEIK
PWENIPIISYLFLRGKCSSCKASISMRYPLVELACGLLSAFIAWHFGFTWQAGAMLLLTWGLLAMSLIDVDHQLLPDSLV
LPLLWLGLIANSFGLFTSLEGALWGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGLIMLRLRNAETSTPIPFGPYLAIAGWIALLWGEQITSSYLQIAGF
MSVIDFLASHVLAFVLCALLIGLLVGSFLNVLIYRLPKMMQREWREQAREILELSTEAPAATFNLVLPNSSCPHCAHEIK
PWENIPIISYLFLRGKCSSCKASISMRYPLVELACGLLSAFIAWHFGFTWQAGAMLLLTWGLLAMSLIDVDHQLLPDSLV
LPLLWLGLIANSFGLFTSLEGALWGAIAGYLSLWSVYWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSLVG
AVLGLIMLRLRNAETSTPIPFGPYLAIAGWIALLWGEQITSSYLQIAGF
Nucleotide
Download Length: 870 bp
>NTDB_id=1002532 ABFT82_RS21770 WP_347505897.1 4395908..4396777(-) (pilD) [Pseudomonas anguilliseptica strain SICAU PA001 isolate largemouth bass]
ATGTCAGTAATCGACTTTTTGGCCAGCCATGTGCTGGCCTTTGTTTTATGCGCACTGCTTATTGGCTTGCTGGTCGGTAG
CTTCCTCAATGTATTGATTTACCGCCTACCAAAAATGATGCAGCGCGAGTGGCGTGAACAGGCTCGCGAAATATTGGAGC
TGTCCACTGAAGCACCGGCCGCAACATTCAACCTGGTATTGCCTAACTCAAGCTGCCCGCACTGCGCCCACGAAATAAAA
CCCTGGGAAAACATTCCGATTATCAGCTACCTGTTTCTGCGCGGCAAGTGCTCGAGCTGTAAAGCGTCGATCAGCATGCG
CTACCCACTGGTTGAGCTGGCCTGCGGCTTGTTGTCGGCCTTTATCGCGTGGCACTTCGGTTTTACCTGGCAGGCTGGCG
CGATGCTCCTGTTGACCTGGGGCTTGCTAGCGATGAGCCTGATCGATGTTGACCACCAGTTGCTGCCGGATTCACTGGTG
CTGCCGCTGCTGTGGCTCGGCTTGATTGCAAACAGCTTCGGTCTATTTACTAGCCTGGAGGGTGCGCTCTGGGGCGCGAT
TGCCGGCTACTTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTAACAGGTAAGGAAGGAATGGGTTATGGCGACT
TCAAGCTGTTGGCCATGCTCGGTGCTTGGGGTGGTTGGCAGGTATTGCCTCTAACCATATTGCTGTCTTCGCTAGTTGGC
GCGGTACTGGGTTTGATTATGTTGCGCCTGCGTAACGCGGAAACCAGCACACCGATCCCCTTTGGTCCTTATCTGGCGAT
TGCCGGCTGGATTGCCTTACTTTGGGGTGAGCAAATCACCTCCAGCTACCTGCAGATTGCCGGGTTCTGA
ATGTCAGTAATCGACTTTTTGGCCAGCCATGTGCTGGCCTTTGTTTTATGCGCACTGCTTATTGGCTTGCTGGTCGGTAG
CTTCCTCAATGTATTGATTTACCGCCTACCAAAAATGATGCAGCGCGAGTGGCGTGAACAGGCTCGCGAAATATTGGAGC
TGTCCACTGAAGCACCGGCCGCAACATTCAACCTGGTATTGCCTAACTCAAGCTGCCCGCACTGCGCCCACGAAATAAAA
CCCTGGGAAAACATTCCGATTATCAGCTACCTGTTTCTGCGCGGCAAGTGCTCGAGCTGTAAAGCGTCGATCAGCATGCG
CTACCCACTGGTTGAGCTGGCCTGCGGCTTGTTGTCGGCCTTTATCGCGTGGCACTTCGGTTTTACCTGGCAGGCTGGCG
CGATGCTCCTGTTGACCTGGGGCTTGCTAGCGATGAGCCTGATCGATGTTGACCACCAGTTGCTGCCGGATTCACTGGTG
CTGCCGCTGCTGTGGCTCGGCTTGATTGCAAACAGCTTCGGTCTATTTACTAGCCTGGAGGGTGCGCTCTGGGGCGCGAT
TGCCGGCTACTTGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTAACAGGTAAGGAAGGAATGGGTTATGGCGACT
TCAAGCTGTTGGCCATGCTCGGTGCTTGGGGTGGTTGGCAGGTATTGCCTCTAACCATATTGCTGTCTTCGCTAGTTGGC
GCGGTACTGGGTTTGATTATGTTGCGCCTGCGTAACGCGGAAACCAGCACACCGATCCCCTTTGGTCCTTATCTGGCGAT
TGCCGGCTGGATTGCCTTACTTTGGGGTGAGCAAATCACCTCCAGCTACCTGCAGATTGCCGGGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
56.777 |
94.464 |
0.536 |
| pilD | Vibrio campbellii strain DS40M4 |
55.678 |
94.464 |
0.526 |
| pilD | Acinetobacter baumannii D1279779 |
50.35 |
98.962 |
0.498 |
| pilD | Acinetobacter nosocomialis M2 |
50 |
98.962 |
0.495 |
| pilD | Neisseria gonorrhoeae MS11 |
49.81 |
91.003 |
0.453 |