Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ABFY19_RS13710 Genome accession   NZ_CP156677
Coordinates   2843700..2844095 (-) Length   131 a.a.
NCBI ID   WP_418791213.1    Uniprot ID   -
Organism   Phosphitispora sp. TUW77     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2838700..2849095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFY19_RS13685 (ABFY19_13645) lonC 2839518..2841488 (-) 1971 WP_418791209.1 Lon family ATP-dependent protease -
  ABFY19_RS13690 (ABFY19_13650) rplI 2841530..2841976 (-) 447 WP_418792612.1 50S ribosomal protein L9 -
  ABFY19_RS13695 (ABFY19_13655) - 2841987..2842943 (-) 957 WP_418791210.1 YybS family protein -
  ABFY19_RS13700 (ABFY19_13660) - 2842944..2843267 (-) 324 WP_418791211.1 MazG-like family protein -
  ABFY19_RS13705 (ABFY19_13665) rpsR 2843421..2843651 (-) 231 WP_418791212.1 30S ribosomal protein S18 -
  ABFY19_RS13710 (ABFY19_13670) ssbA 2843700..2844095 (-) 396 WP_418791213.1 single-stranded DNA-binding protein Machinery gene
  ABFY19_RS13715 (ABFY19_13675) rpsF 2844146..2844430 (-) 285 WP_418791214.1 30S ribosomal protein S6 -
  ABFY19_RS13720 (ABFY19_13680) - 2844583..2846031 (-) 1449 WP_418791215.1 asparagine synthase-related protein -
  ABFY19_RS13725 (ABFY19_13685) - 2846056..2847489 (-) 1434 WP_418791216.1 trimethylamine methyltransferase family protein -
  ABFY19_RS13730 (ABFY19_13690) - 2847516..2848199 (-) 684 WP_418791217.1 cobalamin B12-binding domain-containing protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14601.43 Da        Isoelectric Point: 5.2136

>NTDB_id=1002052 ABFY19_RS13710 WP_418791213.1 2843700..2844095(-) (ssbA) [Phosphitispora sp. TUW77]
MLNRIVLIGRLTKDPELRYTPNGKAVAGFTLAVDRPFKNQQGEREADFINIVVWGTQAEHCANYLAKGKLAAVDGRLQIR
SYDGQDGQRRWVTEVVADTVRFLSPKDSTANQADSGIMGKEIDFSDDDIPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1002052 ABFY19_RS13710 WP_418791213.1 2843700..2844095(-) (ssbA) [Phosphitispora sp. TUW77]
GTGTTAAACCGTATTGTACTTATCGGAAGGTTAACAAAGGACCCCGAGTTGCGGTATACGCCAAATGGCAAGGCTGTTGC
CGGTTTTACCCTGGCGGTGGATAGGCCTTTTAAAAACCAGCAGGGTGAGCGTGAGGCGGATTTTATAAATATAGTGGTCT
GGGGTACTCAGGCAGAACACTGTGCTAACTATCTTGCAAAGGGCAAACTGGCAGCGGTAGATGGTCGGCTTCAGATTCGT
TCGTATGATGGACAGGACGGGCAGCGCCGTTGGGTTACTGAAGTAGTAGCTGATACGGTACGCTTTTTAAGTCCTAAAGA
TAGTACGGCTAATCAGGCTGATTCAGGTATCATGGGTAAAGAAATTGATTTTTCCGATGACGACATACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.744

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

42.941

100

0.557
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

80.916

0.458
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.424

100

0.427
  ssbB/cilA Streptococcus mitis NCTC 12261

41.667

100

0.42
  ssbB/cilA Streptococcus pneumoniae R6

41.667

100

0.42
  ssbB/cilA Streptococcus mitis SK321

41.667

100

0.42
  ssbB/cilA Streptococcus pneumoniae Rx1

41.667

100

0.42
  ssbB/cilA Streptococcus pneumoniae D39

41.667

100

0.42
  ssbA Streptococcus mutans UA159

40.441

100

0.42
  ssbB Streptococcus sobrinus strain NIDR 6715-7

40.909

100

0.412

Multiple sequence alignment