Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ABFU78_RS05335 Genome accession   NZ_CP156011
Coordinates   1262632..1263891 (-) Length   419 a.a.
NCBI ID   WP_407363956.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. campestris strain CFBP 6943     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1257632..1268891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU78_RS05305 (ABFU78_05305) - 1258135..1258626 (-) 492 WP_011038220.1 GNAT family N-acetyltransferase -
  ABFU78_RS05310 (ABFU78_05310) - 1258623..1258913 (-) 291 WP_011038219.1 DUF1778 domain-containing protein -
  ABFU78_RS05315 (ABFU78_05315) - 1258988..1259389 (-) 402 WP_040940795.1 SymE family type I addiction module toxin -
  ABFU78_RS05320 (ABFU78_05320) - 1259532..1260640 (+) 1109 WP_087942068.1 IS3 family transposase -
  ABFU78_RS05325 (ABFU78_05325) coaE 1261125..1261748 (-) 624 WP_274316878.1 dephospho-CoA kinase -
  ABFU78_RS05330 (ABFU78_05330) - 1261762..1262625 (-) 864 WP_040940797.1 A24 family peptidase -
  ABFU78_RS05335 (ABFU78_05335) pilC 1262632..1263891 (-) 1260 WP_407363956.1 type II secretion system F family protein Machinery gene
  ABFU78_RS05340 (ABFU78_05340) - 1264260..1264676 (+) 417 WP_227971328.1 pilin -
  ABFU78_RS05345 (ABFU78_05345) - 1264765..1265175 (+) 411 WP_274316877.1 pilin -
  ABFU78_RS05350 (ABFU78_05350) pilB 1265215..1266948 (+) 1734 WP_227971327.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFU78_RS05355 (ABFU78_05355) pilR 1267366..1268760 (-) 1395 WP_042594919.1 sigma-54 dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45552.83 Da        Isoelectric Point: 10.2827

>NTDB_id=1001165 ABFU78_RS05335 WP_407363956.1 1262632..1263891(-) (pilC) [Xanthomonas campestris pv. campestris strain CFBP 6943]
MSATVRNANKNKPATAADQMSPFVWEGTDKRGVKMKGEQTARNANLLRAELRRQGITPIVVKPKPKPLFGAAGKKVTPKD
IAFFSRQMATMMKSGVPIVGALEIIGSGQKNPRMRNMVGQVRTDIEGGSSLHEAISRHPVQFDELYRNLVKAGEGAGVLE
TVLDTIASYKENIEALKGKIKKALFYPAMVMAVALLVSSILLIWVVPQFEDVFKGFGAELPAFTQLIVNASRFMVVWWWA
LLVVLIGAIVGFIFAYKRSPAMQHGMDRLILKVPIIGQIMHNSSIARFARTTAVTFKAGVPLVEALSIVAGATGNSVYEA
AVLRMRDDVSVGYPVNVAMKQVNLFPHMVVQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLIEPLIMVFIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1001165 ABFU78_RS05335 WP_407363956.1 1262632..1263891(-) (pilC) [Xanthomonas campestris pv. campestris strain CFBP 6943]
ATGTCAGCAACAGTACGTAACGCTAACAAGAACAAACCGGCCACAGCGGCCGATCAGATGAGTCCGTTTGTCTGGGAAGG
GACCGACAAGCGTGGCGTGAAGATGAAAGGGGAGCAGACTGCTCGAAATGCAAACTTGCTGCGGGCCGAGTTGCGCCGCC
AAGGCATCACCCCGATAGTGGTGAAGCCTAAGCCGAAACCGCTCTTCGGCGCAGCAGGCAAGAAGGTCACCCCCAAGGAC
ATCGCTTTTTTCAGCAGACAGATGGCGACGATGATGAAGTCTGGCGTGCCCATCGTTGGAGCGCTGGAAATCATTGGCAG
CGGCCAGAAAAATCCGCGTATGCGGAACATGGTCGGTCAAGTTCGCACCGACATCGAGGGCGGCTCTTCGCTGCACGAGG
CTATTAGCAGGCACCCTGTCCAGTTCGATGAGCTTTATCGAAATCTTGTCAAGGCGGGCGAAGGCGCTGGCGTCTTGGAA
ACGGTGCTCGATACCATTGCTTCTTACAAAGAAAACATCGAAGCACTGAAAGGCAAGATCAAGAAGGCATTGTTTTATCC
CGCCATGGTGATGGCAGTCGCCTTACTTGTCAGCTCCATCCTTTTGATTTGGGTAGTCCCACAGTTTGAGGACGTCTTCA
AAGGATTCGGGGCAGAACTTCCTGCCTTCACTCAGCTGATCGTGAATGCATCACGTTTTATGGTGGTGTGGTGGTGGGCC
CTTTTGGTTGTCCTGATTGGAGCAATCGTAGGTTTTATTTTTGCTTACAAACGCTCTCCGGCAATGCAGCACGGGATGGA
CAGACTGATTCTTAAAGTGCCGATCATTGGTCAGATCATGCACAACAGCTCCATTGCCCGCTTTGCTAGAACCACCGCTG
TAACATTTAAGGCTGGTGTACCGCTTGTTGAAGCACTCAGCATCGTTGCCGGCGCAACAGGCAACTCGGTCTACGAGGCT
GCAGTCCTGCGCATGCGCGACGACGTGTCCGTGGGCTACCCGGTCAACGTGGCGATGAAGCAGGTCAACCTGTTCCCGCA
CATGGTGGTACAGATGACCGCCATCGGCGAAGAGGCCGGCGCCTTGGATGCAATGCTGTTCAAAGTTGCCGAGTACTTCG
AGCAAGAGGTCAACAATGCGGTTGATGCGCTGAGCAGCCTGATCGAACCCCTCATCATGGTGTTCATTGGTACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCCATCTTCAAGCTCGCTTCGGTGGTTGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

52.099

96.659

0.504
  pilC Acinetobacter baylyi ADP1

52.5

95.465

0.501
  pilC Legionella pneumophila strain ERS1305867

51.358

96.659

0.496
  pilC Acinetobacter baumannii D1279779

50.372

96.181

0.484
  pilG Neisseria gonorrhoeae MS11

42.822

96.42

0.413
  pilG Neisseria meningitidis 44/76-A

42.327

96.42

0.408
  pilC Vibrio cholerae strain A1552

40.887

96.897

0.396
  pilC Vibrio campbellii strain DS40M4

39.259

96.659

0.379

Multiple sequence alignment