Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABFU78_RS05355 Genome accession   NZ_CP156011
Coordinates   1267366..1268760 (-) Length   464 a.a.
NCBI ID   WP_042594919.1    Uniprot ID   A0AAJ3CC33
Organism   Xanthomonas campestris pv. campestris strain CFBP 6943     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1262366..1273760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU78_RS05335 (ABFU78_05335) pilC 1262632..1263891 (-) 1260 WP_407363956.1 type II secretion system F family protein Machinery gene
  ABFU78_RS05340 (ABFU78_05340) - 1264260..1264676 (+) 417 WP_227971328.1 pilin -
  ABFU78_RS05345 (ABFU78_05345) - 1264765..1265175 (+) 411 WP_274316877.1 pilin -
  ABFU78_RS05350 (ABFU78_05350) pilB 1265215..1266948 (+) 1734 WP_227971327.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABFU78_RS05355 (ABFU78_05355) pilR 1267366..1268760 (-) 1395 WP_042594919.1 sigma-54 dependent transcriptional regulator Regulator
  ABFU78_RS05360 (ABFU78_05360) - 1268970..1270580 (-) 1611 WP_040940804.1 PAS domain-containing sensor histidine kinase -
  ABFU78_RS05365 (ABFU78_05365) sucC 1270814..1271983 (+) 1170 WP_011038209.1 ADP-forming succinate--CoA ligase subunit beta -
  ABFU78_RS05370 (ABFU78_05370) sucD 1272008..1272883 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  ABFU78_RS05375 (ABFU78_05375) - 1272987..1273397 (+) 411 WP_029628876.1 CopG family ribbon-helix-helix protein -
  ABFU78_RS05380 (ABFU78_05380) - 1273401..1273703 (+) 303 WP_011038207.1 type II toxin-antitoxin system RelE/ParE family toxin -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50293.69 Da        Isoelectric Point: 6.5131

>NTDB_id=1001167 ABFU78_RS05355 WP_042594919.1 1267366..1268760(-) (pilR) [Xanthomonas campestris pv. campestris strain CFBP 6943]
MNETKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCLTDMRLPDGNGIELVTEIARQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRSTIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFIPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERSGDLP
QLAAAIIARLARSHGRPIPLLTQSALDALNQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAASPGTAA
VEPREAVVDIDPASSALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1001167 ABFU78_RS05355 WP_042594919.1 1267366..1268760(-) (pilR) [Xanthomonas campestris pv. campestris strain CFBP 6943]
ATGAACGAAACGAAAAGTGCCCTGGTCGTCGATGACGAGCGTGACATCCGCGAATTGCTTGTTCTCACCCTGGGCCGCAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAATTGCTGGCCAGCAACCCGTACGACCTGTGCCTGA
CGGACATGCGGTTGCCCGACGGCAACGGCATCGAACTGGTGACCGAGATCGCGCGCCAATACCCGCAGACGCCGGTGGCC
ATGATTACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAAGCCGGCGCGTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGGCCGGCGCCGCCACCACCCC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGATTCGACCGCCATGGAGAGCCTGCGCTCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTTGGCGAATCCGGCGTGGGCAAGGAACTGGTGGCCCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGGCCGTTCATTCCGGTCAACTGCGGCGCGATCCCCGCCGAGCTGATGGAGAGCGAGTTCTTCGGCCATA
AGAAGGGCAGCTTTACCGGCGCGCATGCCGACAAACCGGGTCTGTTTCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCAGTGCGCCCGGTCGGCGC
CTCGGGCGAGACGCTGGTGGACGTGCGCATTCTGTCGGCCACACACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGTCACGACCTGTATTACCGCATCAACGTGATCGAGCTGCGTGTGCCACCGCTGCGCGAGCGCAGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATTGCGCGCCTGGCCCGCAGCCATGGCCGCCCGATTCCCTTGCTCACCCAGTCCGCACTCGA
TGCCCTGAACCAATACGGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTGGAACGTGCGCTTGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCATGGCGGCCACCGCCTTGCCGCCAGCCCGGGCACTGCTGCG
GTTGAACCGCGCGAAGCGGTGGTCGACATCGACCCTGCCTCCTCTGCCCTGCCCTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCCCAGCTAGGCATCACGTTTCGTGCGT
TGCGCTACAAGCTGAAGAAGTTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

49.138

100

0.491

Multiple sequence alignment