Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABFU04_RS19425 Genome accession   NZ_CP155965
Coordinates   4479708..4481228 (+) Length   506 a.a.
NCBI ID   WP_011038949.1    Uniprot ID   Q8P442
Organism   Xanthomonas campestris pv. raphani strain BR11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4474708..4486228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABFU04_RS19400 (ABFU04_19380) speE 4475662..4476519 (+) 858 WP_228877069.1 polyamine aminopropyltransferase -
  ABFU04_RS19405 (ABFU04_19385) - 4476634..4477416 (-) 783 WP_407463516.1 hypothetical protein -
  ABFU04_RS19410 (ABFU04_19390) - 4477946..4478605 (+) 660 WP_014506282.1 RIO1 family regulatory kinase/ATPase -
  ABFU04_RS19415 (ABFU04_19395) - 4478891..4479265 (-) 375 WP_202796268.1 P-II family nitrogen regulator -
  ABFU04_RS19420 (ABFU04_19400) ubiK 4479420..4479692 (+) 273 WP_011038948.1 ubiquinone biosynthesis accessory factor UbiK -
  ABFU04_RS19425 (ABFU04_19405) comM 4479708..4481228 (+) 1521 WP_011038949.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ABFU04_RS19430 (ABFU04_19410) - 4481613..4482122 (+) 510 WP_042595605.1 lipocalin family protein -
  ABFU04_RS19435 (ABFU04_19415) - 4482133..4482309 (-) 177 WP_012439469.1 hypothetical protein -
  ABFU04_RS19440 (ABFU04_19420) - 4482691..4484250 (+) 1560 WP_228958062.1 EAL domain-containing protein -
  ABFU04_RS19445 (ABFU04_19425) - 4484689..4484859 (-) 171 WP_154727132.1 hypothetical protein -
  ABFU04_RS19450 (ABFU04_19430) - 4484873..4485994 (-) 1122 WP_228958051.1 acyl-CoA desaturase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53909.63 Da        Isoelectric Point: 8.3405

>NTDB_id=1000403 ABFU04_RS19425 WP_011038949.1 4479708..4481228(+) (comM) [Xanthomonas campestris pv. raphani strain BR11]
MSLALVHSRARVGVHAPEVRVEVHLSGGLPSTQIVGLPEAAVRESRERVRAALLCAQFEFPARRITINLAPADLPKDGGR
FDLPIALGILAASGQIDRQALADYEFLGELALTGELRGIDGVLPAALAAAQAGRRLIVPLANGAEAAIAGHVQAFTARTL
LEVCAALNGTQPPPPAELAIVALGARALPDMADVRGQPHARRALEIAAAGGHHLLLVGSPGCGKTLLASRLPSLLPDASE
AEALETAAITSISGRGLDLARWRQRPYRAPHHTASAVALVGGGTHPRPGEISLAHNGVLFLDELPEWQRQTLEVLREPLE
SGVVTISRAARSMDFPARFQLVAAMNPCPCGWAGDASGRCRCSGDAIRRYRSRISGPLLDRIDLHVDVPRLPPQALRSGA
TGEDSASVRARVAAARERQQVRAQVPNARLDQAATDRHCRLGNDDQLLLERAIEHLQLSARSMHRILRVSRTIADLDDSA
DIATRHLTEAIGYRKLDRALDTSSAA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=1000403 ABFU04_RS19425 WP_011038949.1 4479708..4481228(+) (comM) [Xanthomonas campestris pv. raphani strain BR11]
ATGAGTCTGGCGCTGGTGCACAGCCGTGCCCGCGTGGGAGTGCACGCGCCTGAAGTCCGGGTGGAAGTGCATCTCTCCGG
CGGCCTGCCTTCCACCCAGATCGTGGGCCTGCCCGAGGCCGCGGTGCGTGAGTCACGCGAACGGGTCCGTGCCGCCTTGC
TGTGCGCACAGTTCGAATTCCCCGCACGCCGCATCACCATCAACCTGGCGCCGGCGGATCTGCCCAAGGACGGCGGCCGC
TTCGACCTGCCGATCGCGCTCGGCATCCTTGCGGCCAGCGGGCAGATCGACCGCCAGGCCCTGGCCGACTACGAATTCCT
CGGCGAGCTGGCCCTCACCGGCGAGCTGCGCGGCATCGATGGGGTGCTGCCTGCGGCCCTGGCCGCCGCGCAGGCCGGGC
GGCGCCTGATCGTGCCGCTGGCCAACGGCGCCGAGGCGGCCATCGCCGGACACGTGCAGGCCTTTACCGCGCGCACCTTG
CTGGAAGTGTGCGCCGCACTCAACGGCACCCAGCCGCCACCGCCCGCCGAACTGGCGATCGTGGCGCTCGGCGCCCGCGC
GCTACCGGACATGGCCGACGTGCGCGGGCAGCCGCATGCGCGCCGGGCGCTGGAGATCGCCGCGGCCGGCGGCCATCACC
TGTTGCTGGTCGGCAGCCCTGGCTGCGGCAAGACCCTGCTGGCCTCGCGCCTGCCCAGTCTGTTGCCGGACGCCAGCGAG
GCCGAGGCGCTGGAAACCGCCGCCATCACCTCCATCAGCGGACGCGGCCTGGACCTGGCGCGCTGGCGGCAACGCCCTTA
TCGCGCCCCGCACCACACCGCCAGCGCGGTGGCGCTGGTGGGCGGTGGCACCCATCCGCGCCCGGGTGAGATCTCATTGG
CGCACAACGGGGTGCTGTTCCTGGACGAGCTCCCAGAGTGGCAGCGGCAGACCCTGGAAGTGCTGCGCGAGCCACTGGAG
TCCGGCGTGGTCACCATCTCGCGGGCTGCGCGCAGCATGGACTTTCCGGCGCGGTTCCAGCTGGTCGCCGCAATGAACCC
CTGCCCGTGCGGTTGGGCCGGCGATGCCAGCGGGCGATGCCGCTGCAGCGGTGACGCCATCCGCCGGTATCGCAGCCGCA
TTTCCGGGCCGCTGCTGGATCGCATCGACCTGCACGTCGACGTGCCGCGCCTGCCGCCGCAGGCACTGCGCAGCGGTGCG
ACCGGCGAGGACAGTGCCAGCGTGCGTGCACGCGTTGCCGCCGCACGCGAACGCCAGCAGGTACGTGCGCAGGTGCCCAA
TGCCCGCCTGGACCAGGCCGCCACCGACCGCCACTGCCGGTTGGGCAATGACGATCAGCTGCTGCTGGAACGCGCCATCG
AACACCTGCAACTGTCCGCGCGCTCGATGCATCGCATCCTGCGCGTCTCGCGCACCATCGCCGATCTCGACGATAGCGCC
GACATCGCCACCCGTCACCTCACCGAAGCCATCGGCTACCGCAAACTCGACCGTGCCCTTGATACCTCCAGCGCCGCATG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8P442

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.138

100

0.551
  comM Haemophilus influenzae Rd KW20

54.118

100

0.545
  comM Vibrio campbellii strain DS40M4

53.516

100

0.542
  comM Glaesserella parasuis strain SC1401

53.953

100

0.54
  comM Legionella pneumophila str. Paris

52.988

99.209

0.526
  comM Legionella pneumophila strain ERS1305867

52.988

99.209

0.526
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.047

100

0.46

Multiple sequence alignment