Detailed information NTG1000317

Bioinformatically predicted

Overview

• Name: comP
• Type: Machinery gene
• Locus tag: ABFU14_RS05330
• Genome accession: NZ_CP155961
• Coordinates: 1267549..1267971 (+)
• Length: 140 a.a.
• NCBI ID: WP_323475831.1
• Uniprot ID: -
• Organism: Xanthomonas campestris pv. raphani strain NBC271
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1265960..1278208	1267549..1267971	within	0

Gene organization within MGE regions

Location: 1265960..1278208

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABFU14_RS05325 (ABFU14_05325)	pilC	1265960..1267222 (-)	1263	WP_407471758.1	type II secretion system F family protein	Machinery gene
ABFU14_RS05330 (ABFU14_05330)	comP	1267549..1267971 (+)	423	WP_323475831.1	pilin	Machinery gene
ABFU14_RS05335 (ABFU14_05335)	pilA2	1268140..1268517 (+)	378	WP_407471905.1	pilin	Machinery gene
ABFU14_RS05340 (ABFU14_05340)	pilB	1268690..1270399 (+)	1710	WP_323475836.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ABFU14_RS05345 (ABFU14_05345)	-	1270582..1271373 (-)	792	WP_407471759.1	zeta toxin family protein	-
ABFU14_RS05350 (ABFU14_05350)	-	1271318..1271674 (-)	357	WP_407471760.1	hypothetical protein	-
ABFU14_RS05355 (ABFU14_05355)	pilR	1271872..1273266 (-)	1395	WP_043921909.1	sigma-54 dependent transcriptional regulator	Regulator
ABFU14_RS05360 (ABFU14_05360)	-	1273475..1275085 (-)	1611	WP_115006667.1	PAS domain-containing sensor histidine kinase	-
ABFU14_RS05365 (ABFU14_05365)	sucC	1275319..1276488 (+)	1170	WP_011038209.1	ADP-forming succinate--CoA ligase subunit beta	-
ABFU14_RS05370 (ABFU14_05370)	sucD	1276513..1277388 (+)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
ABFU14_RS05375 (ABFU14_05375)	-	1277492..1277902 (+)	411	WP_029628876.1	CopG family ribbon-helix-helix protein	-
ABFU14_RS05380 (ABFU14_05380)	-	1277906..1278208 (+)	303	WP_011038207.1	type II toxin-antitoxin system RelE/ParE family toxin	-

Sequence

Protein

• Length: 140 a.a.
• Molecular weight: 13878.97 Da
• Isoelectric Point: 8.1053

>NTDB_id=1000317 ABFU14_RS05330 WP_323475831.1 1267549..1267971(+) (comP) [Xanthomonas campestris pv. raphani strain NBC271]
MNKQQGFTLIELMIVVAIIAILAAIALPAYQDYTIRARVSEAAVLASGAKTTVAENIANNGGTIAAGACLGVDTTAPATT
NVASVTCGANSGAIAITTTAKAGAVTLTFTPQPAAGIAGTKWTCVATGGKAAYYPAECRS

Nucleotide

• Length: 423 bp

>NTDB_id=1000317 ABFU14_RS05330 WP_323475831.1 1267549..1267971(+) (comP) [Xanthomonas campestris pv. raphani strain NBC271]
ATGAACAAGCAACAAGGTTTTACCCTTATTGAATTGATGATCGTTGTGGCGATCATTGCTATTCTGGCAGCTATCGCTTT
GCCTGCATATCAAGACTATACAATCCGTGCACGTGTCTCTGAGGCTGCCGTGCTTGCTTCGGGTGCTAAAACTACAGTTG
CTGAGAACATCGCAAATAACGGCGGAACAATAGCTGCCGGCGCATGTCTTGGCGTCGATACCACCGCGCCGGCAACCACA
AATGTCGCTAGCGTTACCTGTGGCGCCAATAGCGGAGCGATTGCAATTACCACAACTGCTAAGGCCGGTGCAGTTACCTT
GACCTTTACTCCGCAGCCTGCTGCCGGTATTGCTGGTACTAAGTGGACCTGTGTTGCGACCGGCGGTAAGGCAGCTTACT
ATCCGGCTGAATGCCGTAGTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

• Pilin (bacterial filament) (Pilin) (36-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comP	Acinetobacter baylyi ADP1	53.691	100	0.571
pilA2	Legionella pneumophila str. Paris	56.115	99.286	0.557
pilA2	Legionella pneumophila strain ERS1305867	55.396	99.286	0.55
pilA	Ralstonia pseudosolanacearum GMI1000	45.238	100	0.543
pilA/pilA1	Eikenella corrodens VA1	40.789	100	0.443
pilA	Vibrio parahaemolyticus RIMD 2210633	40.441	97.143	0.393
pilA/pilAI	Pseudomonas stutzeri DSM 10701	36.486	100	0.386
pilA	Acinetobacter baumannii strain A118	38.806	95.714	0.371