TAfinder detailed results

Overview

Job ID wrVbGpMxFf
Sequence name NZ_CP026085.1 Escherichia coli strain DH5alpha chromosome, complete genome
Predicted type I

Toxin (Protein)


Predicted family hokC (T10209) Predicted domain -
Locus tag orf3816 Length 69 a.a.
Coordinates 4067637..4067846 (+)

Antitoxin (RNA)


Predicted family sokC (AT10209) Predicted domain -
Locus tag NuclAT_21 Length 58 bp
Coordinates 4067588..4067645 (-)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
orf3812 4062821..4063966 + 1146 ORF3812 Predicted ORF by PRODIGAL Version 1.20 -
orf3813 4063979..4064938 + 960 ORF3813 Predicted ORF by PRODIGAL Version 1.20 -
orf3814 4064977..4065876 - 900 ORF3814 Predicted ORF by PRODIGAL Version 1.20 -
orf3815 4065942..4067108 - 1167 ORF3815 Predicted ORF by PRODIGAL Version 1.20 -
- 4067588..4067645 - 177 - - Antitoxin
orf3816 4067637..4067846 + 210 ORF3816 Predicted ORF by PRODIGAL Version 1.20 Toxin
orf3817 4067950..4069080 - 1131 ORF3817 Predicted ORF by PRODIGAL Version 1.20 -
orf3818 4069169..4071085 - 1917 ORF3818 Predicted ORF by PRODIGAL Version 1.20 -
orf3819 4071462..4071866 + 405 ORF3819 Predicted ORF by PRODIGAL Version 1.20 -
orf3820 4071892..4072605 + 714 ORF3820 Predicted ORF by PRODIGAL Version 1.20 -

Domains

The domains were predicted by HMMER and were sorted by score.

Toxin


No domain identified.



Sequences

Toxin        


Download         Length: 69 a.a.        Molecular weight: 7742.28 Da        Isoelectric Point: 9.3680

>ORF3816 TA_27 Toxin
MLNTCRVPLTDRKVKEKRAMKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEV
AVFTAYESE

Download         Length: 210 bp

>ORF3816 TA_27 Toxin
ATGCTGAACACATGTAGAGTGCCTCTTACTGACCGTAAGGTCAAGGAGAAGAGAGCAATG
AAGCAGCATAAGGCGATGATTGTCGCCCTGATCGTCATCTGTATCACCGCCGTAGTGGCG
GCGCTGGTAACGAGAAAAGACCTCTGTGAGGTTCACATCCGAACTGGCCAGACGGAGGTT
GCTGTTTTCACGGCTTACGAATCCGAGTAA

Antitoxin


Download         Length: 58 bp

>NuclAT_21 TA_27 Antitoxin
TAGAGAAAAGCCCCGAGTGATATTTTACTATCAACCCGAGGCCCCCTATATGCTGAAC

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
T10209 Escherichia coli strain ECOR24

100

100

0.725
T10039 Escherichia coli O157:H7 str. Sakai

80

98.039

0.58
T6324 Escherichia coli

40.909

84.615

0.261
T6363 uncultured bacterium

40.909

84.615

0.261
T10210 Hafnia alvei

41.304

88.462

0.275
T10208 Escherichia coli C

41.86

86

0.261
T6369 Escherichia coli K-12

37.778

91.837

0.246
T10124 Erwinia amylovora ATCC 49946

50

93.75

0.217
T6370 Escherichia coli

31.111

90

0.203
Protein Organism Identities (%) Coverage (%) Ha-value