MGE detailed information
MGE type: Genomic_island MGE length: 11014 bp
Accession: NZ_CP116094 Location: 4092844..4103857 Organism: Escherichia coli strain DETEC-S560 Replicon: chromosome
Accession: NZ_CP116094 Location: 4092844..4103857 Organism: Escherichia coli strain DETEC-S560 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PIC78_RS19765 (4088676) | 4088676..4090007 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| PIC78_RS19770 (4090029) | 4090029..4091018 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| PIC78_RS19775 (4091117) | 4091117..4092055 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| PIC78_RS19780 (4092370) | 4092370..4092588 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| PIC78_RS19785 (4092844) | 4092844..4093383 | + | 540 | WP_000675733.1 | protein YhaB | - |
| PIC78_RS19790 (4093405) | 4093405..4094592 | + | 1188 | WP_000484594.1 | YhaC family protein | - |
| PIC78_RS19795 (4094760) | 4094760..4095728 | + | 969 | WP_000654804.1 | IS5 family transposase IS903B | Transposase |
| PIC78_RS19805 (4096681) | 4096681..4097826 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| PIC78_RS19810 (4097923) | 4097923..4098813 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| PIC78_RS19815 (4098843) | 4098843..4099613 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| PIC78_RS19820 (4099629) | 4099629..4100963 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| PIC78_RS19825 (4101338) | 4101338..4102909 | + | 1572 | WP_001273752.1 | galactarate dehydratase | - |
| PIC78_RS19830 (4103058) | 4103058..4103393 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| PIC78_RS19835 (4103393) | 4103393..4103857 | + | 465 | WP_000347275.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| PIC78_RS19840 (4103912) | 4103912..4104721 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| PIC78_RS19845 (4104970) | 4104970..4106250 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| PIC78_RS19850 (4106273) | 4106273..4106746 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| PIC78_RS19855 (4106757) | 4106757..4107536 | + | 780 | WP_000406209.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| PIC78_RS19860 (4107526) | 4107526..4108404 | + | 879 | WP_001295548.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| PIC78_RS19865 (4108422) | 4108422..4108856 | + | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.007 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.004 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.004 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.004 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.007 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.007 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.004 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.007 |