MGE detailed information
MGE type: Genomic_island MGE length: 11675 bp
Accession: NZ_CP104330 Location: 607968..619642 Organism: Escherichia coli strain THB42-F3 Replicon: chromosome
Accession: NZ_CP104330 Location: 607968..619642 Organism: Escherichia coli strain THB42-F3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| N0544_RS02935 (604144) | 604144..604701 | - | 558 | Protein_574 | amidohydrolase family protein | - |
| N0544_RS02940 (604697) | 604697..605068 | - | 372 | Protein_575 | PTS sugar transporter subunit IIC | - |
| N0544_RS02945 (605079) | 605079..605552 | - | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| N0544_RS02950 (605575) | 605575..606855 | - | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| N0544_RS02955 (607104) | 607104..607913 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| N0544_RS02960 (607968) | 607968..608432 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| N0544_RS02965 (608432) | 608432..608767 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| N0544_RS02970 (608916) | 608916..610487 | - | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| N0544_RS02975 (610862) | 610862..612196 | + | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| N0544_RS02980 (612212) | 612212..612982 | + | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| N0544_RS02985 (613012) | 613012..613902 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| N0544_RS02990 (613999) | 613999..615144 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| N0544_RS03000 (616167) | 616167..617354 | - | 1188 | WP_000484600.1 | YhaC family protein | - |
| N0544_RS03005 (617376) | 617376..617915 | - | 540 | WP_000675733.1 | protein YhaB | - |
| N0544_RS03010 (618171) | 618171..618389 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| N0544_RS03015 (618704) | 618704..619642 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| N0544_RS03020 (619741) | 619741..620730 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| N0544_RS03025 (620752) | 620752..622083 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| N0544_RS03030 (622109) | 622109..623317 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20042 | CP009789 | 3247092..3263092 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.003 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.004 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.004 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.004 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.001 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.004 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0 |