MGE detailed information
MGE type: Genomic_island MGE length: 11320 bp
Accession: NZ_CP103739 Location: 4315174..4326493 Organism: Escherichia coli strain 3359 Replicon: chromosome
Accession: NZ_CP103739 Location: 4315174..4326493 Organism: Escherichia coli strain 3359 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M5T33_RS21240 (4311006) | 4311006..4312337 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| M5T33_RS21245 (4312359) | 4312359..4313348 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| M5T33_RS21250 (4313447) | 4313447..4314385 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| M5T33_RS21255 (4314700) | 4314700..4314918 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| M5T33_RS21260 (4315174) | 4315174..4315713 | + | 540 | WP_000675733.1 | protein YhaB | - |
| M5T33_RS21265 (4315735) | 4315735..4316097 | + | 363 | Protein_4146 | hypothetical protein | - |
| M5T33_RS21275 (4316930) | 4316930..4317394 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| M5T33_RS21280 (4317394) | 4317394..4317729 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| M5T33_RS21285 (4317878) | 4317878..4319449 | - | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| M5T33_RS21290 (4319824) | 4319824..4321158 | + | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| M5T33_RS21295 (4321174) | 4321174..4321944 | + | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| M5T33_RS21300 (4321974) | 4321974..4322864 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| M5T33_RS21305 (4322961) | 4322961..4324106 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| M5T33_RS21315 (4325016) | 4325016..4325738 | - | 723 | Protein_4155 | hypothetical protein | - |
| M5T33_RS21320 (4325796) | 4325796..4326493 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| M5T33_RS21325 (4326510) | 4326510..4327901 | + | 1392 | Protein_4157 | fimbrial biogenesis outer membrane usher protein | - |
| M5T33_RS21330 (4327912) | 4327912..4329003 | + | 1092 | WP_000816992.1 | fimbrial protein | - |
| M5T33_RS21335 (4329046) | 4329046..4329906 | - | 861 | WP_000809262.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.007 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.003 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.003 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.003 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.003 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.003 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.007 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.007 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.007 |