MGE detailed information
MGE type: Genomic_island MGE length: 11675 bp
Accession: NZ_CP084207 Location: 1417109..1428783 Organism: Escherichia coli strain EC2648-R1-1 Replicon: chromosome
Accession: NZ_CP084207 Location: 1417109..1428783 Organism: Escherichia coli strain EC2648-R1-1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LDB15_RS06755 (1413285) | 1413285..1413842 | - | 558 | Protein_1309 | amidohydrolase family protein | - |
| LDB15_RS06760 (1413838) | 1413838..1414209 | - | 372 | Protein_1310 | PTS sugar transporter subunit IIC | - |
| LDB15_RS06765 (1414220) | 1414220..1414693 | - | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| LDB15_RS06770 (1414716) | 1414716..1415996 | - | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| LDB15_RS06775 (1416245) | 1416245..1417054 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| LDB15_RS06780 (1417109) | 1417109..1417573 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| LDB15_RS06785 (1417573) | 1417573..1417908 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| LDB15_RS06790 (1418057) | 1418057..1419628 | - | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| LDB15_RS06795 (1420003) | 1420003..1421337 | + | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| LDB15_RS06800 (1421353) | 1421353..1422123 | + | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| LDB15_RS06805 (1422153) | 1422153..1423043 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| LDB15_RS06810 (1423140) | 1423140..1424285 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| LDB15_RS06820 (1425308) | 1425308..1426495 | - | 1188 | WP_000484600.1 | YhaC family protein | - |
| LDB15_RS06825 (1426517) | 1426517..1427056 | - | 540 | WP_000675733.1 | protein YhaB | - |
| LDB15_RS06830 (1427312) | 1427312..1427530 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| LDB15_RS06835 (1427845) | 1427845..1428783 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| LDB15_RS06840 (1428882) | 1428882..1429871 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| LDB15_RS06845 (1429893) | 1429893..1431224 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| LDB15_RS06850 (1431250) | 1431250..1432458 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20042 | CP009789 | 3247092..3263092 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.003 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.004 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.004 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.004 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.001 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.004 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0 |