MGE detailed information
MGE type: Genomic_island MGE length: 11675 bp
Accession: NZ_CP074007 Location: 909854..921528 Organism: Escherichia coli strain PD4 Replicon: chromosome
Accession: NZ_CP074007 Location: 909854..921528 Organism: Escherichia coli strain PD4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU74_RS04420 (904855) | 904855..905289 | - | 435 | WP_000948814.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| KFU74_RS04425 (905307) | 905307..906185 | - | 879 | WP_001295548.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| KFU74_RS04430 (906175) | 906175..906954 | - | 780 | WP_000406214.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| KFU74_RS04435 (906965) | 906965..907438 | - | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| KFU74_RS04440 (907461) | 907461..908741 | - | 1281 | WP_104768934.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| KFU74_RS04445 (908990) | 908990..909799 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| KFU74_RS04450 (909854) | 909854..910318 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| KFU74_RS04455 (910318) | 910318..910653 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| KFU74_RS04460 (910802) | 910802..912373 | - | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| KFU74_RS04465 (912748) | 912748..914082 | + | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| KFU74_RS04470 (914098) | 914098..914868 | + | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| KFU74_RS04475 (914898) | 914898..915788 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| KFU74_RS04480 (915885) | 915885..917030 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| KFU74_RS04490 (918053) | 918053..919240 | - | 1188 | Protein_869 | YhaC family protein | - |
| KFU74_RS04495 (919262) | 919262..919801 | - | 540 | WP_000675745.1 | protein YhaB | - |
| KFU74_RS04500 (920057) | 920057..920275 | - | 219 | WP_001390702.1 | transcriptional activator TdcR | - |
| KFU74_RS04505 (920590) | 920590..921528 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| KFU74_RS04510 (921627) | 921627..922616 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| KFU74_RS04515 (922638) | 922638..923969 | + | 1332 | WP_000107720.1 | threonine/serine transporter TdcC | - |
| KFU74_RS04520 (923995) | 923995..925203 | + | 1209 | WP_001297162.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.002 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.002 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.006 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.006 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.006 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.006 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.006 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.006 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.002 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.003 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.002 |