MGE detailed information
MGE type: Genomic_island MGE length: 11675 bp
Accession: NZ_CP072566 Location: 642154..653828 Organism: Escherichia coli strain WG5::TT12A Replicon: chromosome
Accession: NZ_CP072566 Location: 642154..653828 Organism: Escherichia coli strain WG5::TT12A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J8F85_RS03040 (637155) | 637155..637589 | - | 435 | WP_000948824.1 | PTS galactosamine/N-acetylgalactosamine transporter subunit IIA | - |
| J8F85_RS03045 (637607) | 637607..638485 | - | 879 | WP_001295548.1 | PTS N-acetylgalactosamine transporter subunit IID | - |
| J8F85_RS03050 (638475) | 638475..639254 | - | 780 | WP_000406209.1 | PTS N-acetylgalactosamine transporter subunit IIC | - |
| J8F85_RS03055 (639265) | 639265..639738 | - | 474 | WP_081508768.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| J8F85_RS03060 (639761) | 639761..641041 | - | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| J8F85_RS03065 (641290) | 641290..642099 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| J8F85_RS03070 (642154) | 642154..642618 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| J8F85_RS03075 (642618) | 642618..642953 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| J8F85_RS03080 (643102) | 643102..644673 | - | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| J8F85_RS03085 (645048) | 645048..646382 | + | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| J8F85_RS03090 (646398) | 646398..647168 | + | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| J8F85_RS03095 (647198) | 647198..648088 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| J8F85_RS03100 (648185) | 648185..649330 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| J8F85_RS03110 (650353) | 650353..651540 | - | 1188 | Protein_610 | YhaC family protein | - |
| J8F85_RS03115 (651562) | 651562..652101 | - | 540 | WP_069905076.1 | protein YhaB | - |
| J8F85_RS03120 (652357) | 652357..652575 | - | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| J8F85_RS03125 (652890) | 652890..653828 | + | 939 | WP_081508769.1 | transcriptional regulator TdcA | - |
| J8F85_RS03130 (653927) | 653927..654916 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| J8F85_RS03135 (654938) | 654938..656269 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| J8F85_RS03140 (656295) | 656295..657503 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20042 | CP009789 | 3247092..3263092 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.001 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.001 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.004 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.005 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.005 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.005 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.005 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.005 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.001 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.005 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.001 |