MGE detailed information
MGE type: Genomic_island MGE length: 11675 bp
Accession: NZ_CP069542 Location: 1070568..1082242 Organism: Escherichia coli strain FDAARGOS_1248 Replicon: chromosome
Accession: NZ_CP069542 Location: 1070568..1082242 Organism: Escherichia coli strain FDAARGOS_1248 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| I6J78_RS04980 () | 1065569..1066003 | - | 435 | WP_000948824.1 | PTS sugar transporter subunit IIA | - |
| I6J78_RS04985 () | 1066021..1066899 | - | 879 | WP_001295548.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| I6J78_RS04990 () | 1066889..1067668 | - | 780 | WP_000406209.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| I6J78_RS04995 () | 1067679..1068152 | - | 474 | WP_001422480.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| I6J78_RS05000 () | 1068175..1069455 | - | 1281 | WP_158137876.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| I6J78_RS05005 () | 1069704..1070513 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| I6J78_RS05010 () | 1070568..1071032 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| I6J78_RS05015 () | 1071032..1071367 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| I6J78_RS05020 () | 1071516..1073087 | - | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| I6J78_RS05025 () | 1073462..1074796 | + | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| I6J78_RS05030 () | 1074812..1075582 | + | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| I6J78_RS05035 () | 1075612..1076502 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| I6J78_RS05040 () | 1076599..1077744 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| I6J78_RS05050 () | 1078767..1079954 | - | 1188 | WP_000484598.1 | YhaC family protein | - |
| I6J78_RS05055 () | 1079976..1080515 | - | 540 | WP_000675733.1 | hypothetical protein | - |
| I6J78_RS05060 () | 1080771..1081115 | - | 345 | WP_000145840.1 | transcriptional activator TdcR | - |
| I6J78_RS05065 () | 1081304..1082242 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| I6J78_RS05070 () | 1082341..1083330 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| I6J78_RS05075 () | 1083352..1084683 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| I6J78_RS05080 () | 1084709..1085917 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20042 | CP009789 | 3247092..3263092 | 0.008 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.003 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.004 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.004 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.005 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.004 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.004 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.005 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0 |