MGE detailed information
MGE type: Genomic_island MGE length: 14213 bp
Accession: NZ_CP062908 Location: 616511..630723 Organism: Escherichia coli strain Res13-Lact-EB12-05 Replicon: chromosome
Accession: NZ_CP062908 Location: 616511..630723 Organism: Escherichia coli strain Res13-Lact-EB12-05 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IMP23_RS04120 () | 611512..611946 | - | 435 | WP_000948842.1 | PTS sugar transporter subunit IIA | - |
| IMP23_RS04125 () | 611964..612842 | - | 879 | WP_001295548.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| IMP23_RS04130 () | 612832..613611 | - | 780 | WP_195714470.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| IMP23_RS04135 () | 613622..614095 | - | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| IMP23_RS04140 () | 614118..615398 | - | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| IMP23_RS04145 () | 615647..616456 | + | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| IMP23_RS04150 () | 616511..616975 | - | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| IMP23_RS04155 () | 616975..617310 | - | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| IMP23_RS04160 () | 617459..619030 | - | 1572 | WP_061350518.1 | galactarate dehydratase | - |
| IMP23_RS04165 () | 619208..620224 | - | 1017 | WP_001310555.1 | IS5-like element IS5 family transposase | - |
| IMP23_RS04170 () | 620604..621938 | + | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| IMP23_RS04175 () | 621954..622724 | + | 771 | WP_061350411.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| IMP23_RS04180 () | 622754..623644 | + | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| IMP23_RS04185 () | 623741..624886 | + | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| IMP23_RS04195 () | 625923..627131 | - | 1209 | WP_001339197.1 | IS4-like element ISVsa5 family transposase | - |
| IMP23_RS04200 () | 627247..628435 | - | 1189 | Protein_586 | YhaC family protein | - |
| IMP23_RS04205 () | 628457..628996 | - | 540 | WP_000675733.1 | hypothetical protein | - |
| IMP23_RS04210 () | 629252..629596 | - | 345 | WP_000145840.1 | transcriptional activator TdcR | - |
| IMP23_RS04215 () | 629785..630723 | + | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| IMP23_RS04220 () | 630822..631811 | + | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| IMP23_RS04225 () | 631833..633164 | + | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| IMP23_RS04230 () | 633190..634398 | + | 1209 | WP_001295545.1 | propionate kinase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli K-12 strain ER3413 | Genomic island | TA20042 | CP009789 | 3247092..3263092 | 0.009 | |
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.005 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.01 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.005 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.009 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.01 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.01 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.01 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.01 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.005 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.006 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.005 |