MGE detailed information
MGE type: Genomic_island MGE length: 9948 bp
Accession: NZ_CP011321 Location: 3253948..3263895 Organism: Escherichia coli strain SQ88 Replicon: chromosome
Accession: NZ_CP011321 Location: 3253948..3263895 Organism: Escherichia coli strain SQ88 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SG49_RS16105 () | 3249780..3251111 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| SG49_RS16110 () | 3251133..3252122 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| SG49_RS16115 () | 3252221..3253159 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| SG49_RS25875 () | 3253474..3253692 | + | 219 | WP_001301311.1 | transcriptional activator TdcR | - |
| SG49_RS16125 () | 3253948..3254487 | + | 540 | WP_000675733.1 | hypothetical protein | - |
| SG49_RS16130 () | 3254509..3255696 | + | 1188 | WP_000484600.1 | YhaC family protein | - |
| SG49_RS16135 () | 3256719..3257864 | - | 1146 | WP_001300387.1 | glycerate 2-kinase | - |
| SG49_RS16140 () | 3257961..3258851 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| SG49_RS16145 () | 3258881..3259651 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| SG49_RS16150 () | 3259667..3261001 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| SG49_RS16155 () | 3261376..3262947 | + | 1572 | WP_001273753.1 | galactarate dehydratase | - |
| SG49_RS16160 () | 3263096..3263431 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| SG49_RS16165 () | 3263431..3263895 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| SG49_RS16170 () | 3263950..3264759 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| SG49_RS16175 () | 3265008..3266288 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| SG49_RS16180 () | 3266311..3266784 | + | 474 | WP_001336162.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| SG49_RS16185 () | 3266795..3267166 | + | 372 | Protein_3101 | PTS sugar transporter subunit IIC | - |
| SG49_RS16190 () | 3267162..3267719 | + | 558 | Protein_3102 | amidohydrolase family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.004 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.004 | |
| Escherichia coli HS | Genomic island | TA22436 | NC_009800 | 3314965..3326421 | 0.008 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.004 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.005 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.004 |