NZ_CP0111343579218..3589165

MGE detailed information

MGE type: Genomic_island        MGE length: 9948 bp
Accession: NZ_CP011134        Location: 3579218..3589165         Organism: Escherichia coli VR50       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
ECVR50_RS17900 () 3575050..3576381 - 1332 WP_000107723.1 threonine/serine transporter TdcC -
ECVR50_RS17905 () 3576403..3577392 - 990 WP_000548347.1 bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB -
ECVR50_RS17910 () 3577491..3578429 - 939 WP_000104211.1 transcriptional regulator TdcA -
ECVR50_RS30440 () 3578744..3578962 + 219 WP_001301311.1 transcriptional activator TdcR -
ECVR50_RS17920 () 3579218..3579757 + 540 WP_000675733.1 hypothetical protein -
ECVR50_RS17925 () 3579779..3580966 + 1188 WP_000484598.1 YhaC family protein -
ECVR50_RS17930 () 3581989..3583134 - 1146 WP_001300387.1 glycerate 2-kinase -
ECVR50_RS17935 () 3583231..3584121 - 891 WP_001303675.1 2-hydroxy-3-oxopropionate reductase -
ECVR50_RS17940 () 3584151..3584921 - 771 WP_001058209.1 2-dehydro-3-deoxyglucarate aldolase -
ECVR50_RS17945 () 3584937..3586271 - 1335 WP_000599636.1 galactarate/glucarate/glycerate transporter GarP -
ECVR50_RS17950 () 3586646..3588217 + 1572 WP_001273753.1 galactarate dehydratase -
ECVR50_RS17955 () 3588366..3588701 + 336 WP_001307405.1 type II toxin-antitoxin system antitoxin PrlF Antitoxin Detail
ECVR50_RS17960 () 3588701..3589165 + 465 WP_000347275.1 type II toxin-antitoxin system ribonuclease toxin YhaV Toxin Detail
ECVR50_RS17965 () 3589220..3590029 - 810 WP_000072187.1 aga operon transcriptional regulator AgaR -
ECVR50_RS17970 () 3590278..3591558 + 1281 WP_000681920.1 tagatose-bisphosphate aldolase subunit KbaZ -
ECVR50_RS17975 () 3591581..3592054 + 474 WP_001336162.1 PTS N-acetylgalactosamine transporter subunit IIB -
ECVR50_RS17980 () 3592065..3592844 + 780 WP_000406209.1 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC -
ECVR50_RS17985 () 3592834..3593712 + 879 WP_001295548.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
ECVR50_RS17990 () 3593730..3594164 + 435 WP_000948824.1 PTS sugar transporter subunit IIA -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance
Escherichia coli str. K-12 substr. MC4100 Genomic island TA20080 HG738867 3504819..3516493 0.005
Escherichia coli str. K-12 substr. MG1655 Genomic island TA1047 NC_000913 3267854..3277801 0
Escherichia coli str. K-12 substr. W3110 Genomic island TA21455 NC_007779 3265982..3277656 0.005
Escherichia coli HS Genomic island TA22436 NC_009800 3314965..3326421 0.008
Escherichia coli str. K-12 substr. DH10B Genomic island TA22703 NC_010473 3363621..3373568 0
Escherichia coli BW2952 Genomic island TA23871 NC_012759 3153024..3162971 0
Escherichia coli DH1 Genomic island TA27421 NC_017638 3245760..3255707 0.001
Escherichia coli str. K-12 substr. MDS42 Genomic island TA29016 NC_020518 2741187..2751134 0
Escherichia coli BW25113 Genomic island TA48700 NZ_CP009273 3261213..3271160 0
Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 Genomic island TA68442 NZ_CP017979 3158126..3169800 0.005
Escherichia coli C Genomic island TA75057 NZ_CP020543 640607..652281 0.005
Escherichia coli strain DH5alpha Genomic island TA90495 NZ_CP025520 2121277..2131224 0.001
Escherichia coli str. K-12 substr. MC4100 strain K-12 Genomic island TA285025 NZ_HG738867 3504819..3516493 0.005