MGE detailed information
MGE type: Genomic_island MGE length: 9275 bp
Accession: NC_017641 Location: 3754873..3764147 Organism: Escherichia coli UMNK88 Replicon: chromosome
Accession: NC_017641 Location: 3754873..3764147 Organism: Escherichia coli UMNK88 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UMNK88_RS19265 () | 3750144..3751475 | - | 1332 | WP_000107723.1 | threonine/serine transporter TdcC | - |
| UMNK88_RS19270 () | 3751497..3752486 | - | 990 | WP_000548347.1 | bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB | - |
| UMNK88_RS19275 () | 3752585..3753523 | - | 939 | WP_000104211.1 | transcriptional regulator TdcA | - |
| UMNK88_RS34580 () | 3753838..3754056 | + | 219 | WP_169001294.1 | transcriptional activator TdcR | - |
| UMNK88_RS19285 () | 3754312..3754851 | + | 540 | WP_000675734.1 | hypothetical protein | - |
| UMNK88_RS33360 () | 3754873..3756061 | + | 1189 | Protein_3679 | YhaC family protein | - |
| UMNK88_RS19295 () | 3756971..3758116 | - | 1146 | WP_001297158.1 | glycerate 2-kinase | - |
| UMNK88_RS19300 () | 3758213..3759103 | - | 891 | WP_001303675.1 | 2-hydroxy-3-oxopropionate reductase | - |
| UMNK88_RS19305 () | 3759133..3759903 | - | 771 | WP_001058209.1 | 2-dehydro-3-deoxyglucarate aldolase | - |
| UMNK88_RS19310 () | 3759919..3761253 | - | 1335 | WP_000599636.1 | galactarate/glucarate/glycerate transporter GarP | - |
| UMNK88_RS19315 () | 3761628..3763199 | + | 1572 | WP_001273754.1 | galactarate dehydratase | - |
| UMNK88_RS19320 () | 3763348..3763683 | + | 336 | WP_001307405.1 | type II toxin-antitoxin system antitoxin PrlF | Antitoxin Detail |
| UMNK88_RS19325 () | 3763683..3764147 | + | 465 | WP_000347273.1 | type II toxin-antitoxin system ribonuclease toxin YhaV | Toxin Detail |
| UMNK88_RS19330 () | 3764202..3765011 | - | 810 | WP_000072187.1 | aga operon transcriptional regulator AgaR | - |
| UMNK88_RS19335 () | 3765260..3766540 | + | 1281 | WP_000681920.1 | tagatose-bisphosphate aldolase subunit KbaZ | - |
| UMNK88_RS19340 () | 3766563..3767036 | + | 474 | WP_001295547.1 | PTS N-acetylgalactosamine transporter subunit IIB | - |
| UMNK88_RS19345 () | 3767047..3767826 | + | 780 | WP_000406214.1 | PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC | - |
| UMNK88_RS19350 () | 3767816..3768694 | + | 879 | WP_001295548.1 | PTS system mannose/fructose/sorbose family transporter subunit IID | - |
| UMNK88_RS19355 () | 3768712..3769146 | + | 435 | WP_000948814.1 | PTS sugar transporter subunit IIA | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20080 | HG738867 | 3504819..3516493 | 0.007 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA1047 | NC_000913 | 3267854..3277801 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21455 | NC_007779 | 3265982..3277656 | 0.007 | |
| Escherichia coli str. K-12 substr. DH10B | Genomic island | TA22703 | NC_010473 | 3363621..3373568 | 0.002 | |
| Escherichia coli BW2952 | Genomic island | TA23871 | NC_012759 | 3153024..3162971 | 0.002 | |
| Escherichia coli DH1 | Genomic island | TA27421 | NC_017638 | 3245760..3255707 | 0.003 | |
| Escherichia coli str. K-12 substr. MDS42 | Genomic island | TA29016 | NC_020518 | 2741187..2751134 | 0.002 | |
| Escherichia coli BW25113 | Genomic island | TA48700 | NZ_CP009273 | 3261213..3271160 | 0.002 | |
| Escherichia coli str. K-12 substr. W3110 strain K-12 substr. ZK126 | Genomic island | TA68442 | NZ_CP017979 | 3158126..3169800 | 0.007 | |
| Escherichia coli C | Genomic island | TA75057 | NZ_CP020543 | 640607..652281 | 0.007 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90495 | NZ_CP025520 | 2121277..2131224 | 0.003 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285025 | NZ_HG738867 | 3504819..3516493 | 0.007 |