MGE detailed information

MGE type: Integrative_Conjugative_Elements        MGE length: 155642 bp
Accession: NC_012924        Location: 808819..964460         Organism: Streptococcus suis SC84       Replicon: chromosome


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
SSUSC84_RS03940 (SSUSC84_0732) 804614..804988 + 375 WP_002934959.1 DUF1149 family protein -
SSUSC84_RS03945 (SSUSC84_0733) 804990..805841 + 852 WP_011922353.1 DegV family protein -
SSUSC84_RS03950 (SSUSC84_0734) 805850..806617 + 768 WP_011922354.1 4-hydroxy-tetrahydrodipicolinate reductase -
SSUSC84_RS03955 (SSUSC84_0735) 806614..807825 + 1212 WP_011922355.1 CCA tRNA nucleotidyltransferase -
SSUSC84_RS03960 (SSUSC84_0736) 807818..809686 + 1869 WP_011922356.1 ABC-F family ATP-binding cassette domain-containing protein -
SSUSC84_RS03965 (SSUSC84_0737) 809687..810022 + 336 WP_002934966.1 hypothetical protein -
SSUSC84_RS03970 (SSUSC84_0738) 810118..811077 + 960 WP_012775086.1 ROK family glucokinase -
SSUSC84_RS03975 (SSUSC84_0739) 811203..811481 + 279 WP_012775087.1 hypothetical protein -
SSUSC84_RS03980 (SSUSC84_0740) 811493..811795 + 303 WP_012775088.1 hypothetical protein -
SSUSC84_RS03985 (SSUSC84_0741) 811848..812687 + 840 WP_011922359.1 thymidylate synthase -
SSUSC84_RS03990 (SSUSC84_0742) 812973..813485 + 513 WP_011922360.1 dihydrofolate reductase -
SSUSC84_RS04000 (SSUSC84_0744) 813683..814909 + 1227 WP_002934974.1 ATP-dependent Clp protease ATP-binding subunit ClpX -
SSUSC84_RS04005 (SSUSC84_0745) 814965..815552 + 588 WP_012775089.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
SSUSC84_RS04010 (SSUSC84_0746) 815575..815988 + 414 WP_012028095.1 nucleoside-diphosphate kinase -
SSUSC84_RS04015 (SSUSC84_0747) 816092..816763 + 672 WP_011922364.1 HIRAN domain-containing protein -
SSUSC84_RS04020 (SSUSC84_0748) 817045..818877 + 1833 WP_002943192.1 translation elongation factor 4 -
SSUSC84_RS04025 (SSUSC84_0749) 818927..819109 - 183 WP_002934978.1 4-oxalocrotonate tautomerase -
SSUSC84_RS04030 (SSUSC84_0750) 819244..820551 + 1308 WP_012028097.1 excalibur calcium-binding domain-containing protein -
SSUSC84_RS04040 (SSUSC84_0752) 820936..821517 + 582 WP_012028098.1 thymidine kinase -
SSUSC84_RS04045 (SSUSC84_0753) 821968..823047 + 1080 WP_012775090.1 peptide chain release factor 1 -
SSUSC84_RS04050 (SSUSC84_0754) 823047..823880 + 834 WP_011922371.1 peptide chain release factor N(5)-glutamine methyltransferase -
SSUSC84_RS04055 (SSUSC84_0755) 823867..824475 + 609 WP_011922372.1 threonylcarbamoyl-AMP synthase -
SSUSC84_RS04060 (SSUSC84_0756) 824472..824903 + 432 WP_011922373.1 GNAT family N-acetyltransferase -
SSUSC84_RS04065 (SSUSC84_0757) 824927..826186 + 1260 WP_011922374.1 serine hydroxymethyltransferase -
SSUSC84_RS04070 (SSUSC84_0758) 826186..827160 + 975 WP_002943200.1 nucleoid-associated protein -
SSUSC84_RS04075 (SSUSC84_0759) 827161..827760 + 600 WP_011922375.1 lysozyme family protein -
SSUSC84_RS04080 (SSUSC84_0760) 827861..828619 + 759 WP_002943202.1 NADP-dependent 3-hydroxy acid dehydrogenase YdfG VF
SSUSC84_RS04085 (SSUSC84_0761) 828636..829385 + 750 WP_011922377.1 translation initiation factor 1 -
SSUSC84_RS04090 (SSUSC84_0762) 829407..829760 + 354 WP_002943204.1 HIRAN domain-containing protein -
SSUSC84_RS04095 (SSUSC84_0763) 829781..830728 - 948 WP_011922378.1 hypothetical protein -
SSUSC84_RS04100 (SSUSC84_0764) 830756..831544 - 789 WP_012775093.1 hypothetical protein -
SSUSC84_RS04105 (SSUSC84_0765) 831740..833437 + 1698 WP_012775094.1 AAA family ATPase -
SSUSC84_RS04110 (SSUSC84_0766) 833434..834483 + 1050 WP_011922381.1 5-methylcytosine-specific restriction endonuclease system specificity protein McrC -
SSUSC84_RS04115 (SSUSC84_0767) 834689..835999 - 1311 WP_011922382.1 Tyrosine recombinase XerC ; Integrase Integrase
SSUSC84_RS04120 (SSUSC84_0768) 835971..836204 - 234 WP_011922383.1 DUF3173 domain-containing protein -
SSUSC84_RS04125 (SSUSC84_0769) 836182..837420 - 1239 WP_014636592.1 replication initiation protein -
SSUSC84_RS04130 (SSUSC84_0770) 837930..838454 - 525 WP_011922385.1 hypothetical protein -
SSUSC84_RS04135 (SSUSC84_0771) 838482..838787 - 306 WP_012775097.1 hypothetical protein -
SSUSC84_RS04140 (SSUSC84_0772) 839040..840341 + 1302 WP_012775098.1 hypothetical protein -
SSUSC84_RS04145 (SSUSC84_0773) 840366..840572 - 207 WP_012775099.1 helix-turn-helix domain-containing protein -
SSUSC84_RS04150 (SSUSC84_0774) 840689..841666 + 978 WP_011922387.1 membrane protein -
SSUSC84_RS04155 (SSUSC84_0775) 841682..842521 + 840 WP_011922388.1 hypothetical protein -
SSUSC84_RS04160 (SSUSC84_0776) 842538..842942 + 405 WP_012028114.1 hypothetical protein -
SSUSC84_RS04165 (SSUSC84_0777) 843097..844119 + 1023 WP_012775100.1 hypothetical protein -
SSUSC84_RS04170 (SSUSC84_0778) 844109..845725 + 1617 WP_011922392.1 hypothetical protein -
SSUSC84_RS04175 (SSUSC84_0779) 845937..847487 - 1551 WP_002934999.1 glutamine-hydrolyzing GMP synthase -
SSUSC84_RS04180 (SSUSC84_0780) 847763..848461 + 699 WP_002943214.1 GntR family transcriptional regulator -
SSUSC84_RS04185 (SSUSC84_0781) 848564..848896 + 333 WP_002935001.1 putative DNA-binding protein -
SSUSC84_RS04190 (SSUSC84_0782) 848909..850447 + 1539 WP_011922394.1 signal recognition particle protein -
SSUSC84_RS04195 (SSUSC84_0783) 850641..851309 + 669 WP_011922395.1 SatD family protein -
SSUSC84_RS04200 (SSUSC84_0784) 851313..852053 + 741 WP_011922396.1 DUF3307 domain-containing protein -
SSUSC84_RS04205 (SSUSC84_0785) 852118..852555 + 438 WP_011922397.1 AAA family ATPase -
SSUSC84_RS10470 853206..853511 + 306 WP_015445217.1 Abi family protein -
SSUSC84_RS10475 853559..854167 + 609 Protein_773 Abi family protein -
SSUSC84_RS04215 (SSUSC84_0787) 854528..855598 + 1071 WP_012775101.1 Tyrosine recombinase XerS ; Integrase Integrase
SSUSC84_RS04220 (SSUSC84_0788) 855668..857176 - 1509 WP_011922400.1 Phosphomannomutase/phosphoglucomutase VF
SSUSC84_RS04225 (SSUSC84_0789) 857252..858193 - 942 WP_012775102.1 sensor histidine kinase -
SSUSC84_RS04230 (SSUSC84_0790) 858190..858855 - 666 WP_012775103.1 Response regulator protein GraR VF
SSUSC84_RS04235 (SSUSC84_0791) 858894..859151 - 258 WP_011922404.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin Detail
SSUSC84_RS04240 (SSUSC84_0792) 859135..859386 - 252 WP_012775104.1 hypothetical protein Antitoxin Detail
SSUSC84_RS04245 (SSUSC84_0793) 859478..861448 - 1971 WP_012775105.1 FtsX-like permease family protein -
SSUSC84_RS04250 (SSUSC84_0794) 861449..862201 - 753 WP_011922409.1 ABC transporter ATP-binding protein YxdL VF
SSUSC84_RS04255 (SSUSC84_0795) 862337..863071 - 735 WP_011922410.1 ABC transporter permease -
SSUSC84_RS04260 (SSUSC84_0796) 863073..863819 - 747 WP_011922411.1 ABC transporter permease -
SSUSC84_RS04265 (SSUSC84_0797) 863821..864723 - 903 WP_011922412.1 Bacitracin transport ATP-binding protein BcrA VF
SSUSC84_RS04270 (SSUSC84_0798) 864744..865121 - 378 WP_011922413.1 NisI/SpaI family lantibiotic immunity lipoprotein -
SSUSC84_RS10850 (SSUSC84_0799) 865134..865274 - 141 WP_012775106.1 hypothetical protein -
SSUSC84_RS04280 (SSUSC84_0800) 865414..866580 - 1167 WP_011922414.1 carbamoyl phosphate synthase large subunit -
SSUSC84_RS04285 (SSUSC84_0801) 866598..867344 - 747 WP_011922415.1 esterase family protein -
SSUSC84_RS04290 (SSUSC84_0802) 867375..868202 - 828 WP_011922416.1 alpha/beta hydrolase -
SSUSC84_RS04295 (SSUSC84_0803) 868316..869320 - 1005 WP_012775107.1 winged helix DNA-binding domain-containing protein -
SSUSC84_RS04300 (SSUSC84_0804) 869385..870221 - 837 WP_014636394.1 AraC family transcriptional regulator -
SSUSC84_RS04305 (SSUSC84_0805) 870298..871632 - 1335 WP_011922419.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
SSUSC84_RS04310 (SSUSC84_0806) 871828..872577 - 750 WP_011922420.1 HAD family hydrolase -
SSUSC84_RS04315 (SSUSC84_0807) 872762..873961 - 1200 WP_012775108.1 Tyrosine recombinase XerC ; Integrase Integrase
SSUSC84_RS04320 (SSUSC84_0808) 873984..874211 - 228 WP_001258320.1 DUF3173 family protein -
SSUSC84_RS04325 (SSUSC84_0809) 874490..874711 - 222 WP_011922422.1 helix-turn-helix transcriptional regulator -
SSUSC84_RS04330 (SSUSC84_0810) 875041..876138 - 1098 WP_012028132.1 HAMP domain-containing histidine kinase -
SSUSC84_RS04335 (SSUSC84_0811) 876123..876806 - 684 WP_011922424.1 Response regulator ArlR VF
SSUSC84_RS04340 (SSUSC84_0812) 876837..877544 - 708 WP_012028134.1 ABC transporter permease -
SSUSC84_RS04345 (SSUSC84_0813) 877541..878332 - 792 WP_032509741.1 membrane protein -
SSUSC84_RS04350 (SSUSC84_0814) 878322..879038 - 717 WP_011922427.1 putative ABC transporter ATP-binding protein YxlF VF
SSUSC84_RS04355 (SSUSC84_0815) 879059..881281 - 2223 WP_011922428.1 Multidrug resistance ABC transporter ATP-binding and permease protein VF
SSUSC84_RS04360 (SSUSC84_0816) 881285..881536 - 252 WP_012775110.1 PqqD family protein -
SSUSC84_RS04365 (SSUSC84_0817) 881548..883275 - 1728 WP_024379090.1 asparagine synthetase -
SSUSC84_RS10725 (SSUSC84_0818) 883391..883519 - 129 WP_012775112.1 hypothetical protein -
SSUSC84_RS10730 883751..883873 - 123 WP_103557055.1 putative RiPP precursor -
SSUSC84_RS04370 (SSUSC84_0819) 884204..886069 - 1866 WP_011922430.1 relaxase/mobilization nuclease domain-containing protein -
SSUSC84_RS04375 (SSUSC84_0820) 886056..886421 - 366 WP_011922431.1 MobC family plasmid mobilization relaxosome protein -
SSUSC84_RS04380 (SSUSC84_0821) 886421..886786 - 366 WP_012775113.1 hypothetical protein -
SSUSC84_RS04385 887151..888047 + 897 WP_011922433.1 ATP-binding protein -
SSUSC84_RS04390 (SSUSC84_0823) 888169..889386 - 1218 WP_001291561.1 Transposase from transposon Tn916 ; Integrase Integrase
SSUSC84_RS04395 (SSUSC84_0824) 889468..889671 - 204 WP_000814511.1 excisionase -
SSUSC84_RS04400 (SSUSC84_0824a) 890132..890362 - 231 WP_000857133.1 helix-turn-helix domain-containing protein -
SSUSC84_RS04405 (SSUSC84_0825) 890359..890781 - 423 WP_000804885.1 sigma-70 family RNA polymerase sigma factor -
SSUSC84_RS04410 (SSUSC84_0826) 891285..891638 + 354 WP_001227347.1 helix-turn-helix transcriptional regulator -
SSUSC84_RS10485 891698..891865 - 168 WP_000336323.1 cysteine-rich KTR domain-containing protein -
SSUSC84_RS04420 (SSUSC84_0827) 891984..893903 - 1920 WP_001574275.1 tetracycline resistance ribosomal protection protein Tet(M) VF
SSUSC84_RS10490 893919..894035 - 117 WP_001791010.1 tetracycline resistance determinant leader peptide -
SSUSC84_RS04425 (SSUSC84_0828) 894280..895212 - 933 WP_001224319.1 conjugal transfer protein -
SSUSC84_RS04430 (SSUSC84_0829) 895209..896210 - 1002 WP_000769868.1 hypothetical protein VF
SSUSC84_RS04435 (SSUSC84_0830) 896207..898384 - 2178 WP_000804748.1 membrane protein -
SSUSC84_RS04440 (SSUSC84_0831) 898387..900834 - 2448 WP_000331160.1 ATP-binding protein -
SSUSC84_RS04445 (SSUSC84_0832) 900818..901324 - 507 WP_000506270.1 conjugal transfer protein -
SSUSC84_RS04450 (SSUSC84_0833) 901299..901796 - 498 WP_000342539.1 antirestriction protein ArdA -
SSUSC84_RS04455 (SSUSC84_0834) 901913..902134 - 222 WP_001009056.1 hypothetical protein -
SSUSC84_RS04460 (SSUSC84_0835) 902177..903382 - 1206 WP_000398284.1 replication initiation factor domain-containing protein -
SSUSC84_RS10495 903405..903557 - 153 WP_000879507.1 hypothetical protein -
SSUSC84_RS04465 (SSUSC84_0836) 903560..904945 - 1386 WP_000813488.1 DNA translocase FtsK -
SSUSC84_RS04470 (SSUSC84_0837) 904974..905360 - 387 WP_000985015.1 YdcP family protein -
SSUSC84_RS04475 (SSUSC84_0838) 905376..905690 - 315 WP_000420682.1 YdcP family protein -
SSUSC84_RS10750 906034..906351 + 318 Protein_831 ATP-binding protein -
SSUSC84_RS04480 (SSUSC84_0839) 906446..908263 - 1818 WP_012775114.1 ATP-dependent helicase -
SSUSC84_RS04485 (SSUSC84_0840) 908250..910337 - 2088 WP_011922436.1 AAA family ATPase -
SSUSC84_RS04490 (SSUSC84_0841) 910334..911110 - 777 WP_011922437.1 zeta toxin family protein Toxin Detail
SSUSC84_RS04495 (SSUSC84_0842) 911110..911586 - 477 WP_012775115.1 helix-turn-helix domain-containing protein Antitoxin Detail
SSUSC84_RS04500 (SSUSC84_0843) 911656..911946 - 291 WP_024379089.1 hypothetical protein -
SSUSC84_RS04505 (SSUSC84_0844) 911996..912385 - 390 WP_011922440.1 methyl-accepting chemotaxis protein -
SSUSC84_RS04510 (SSUSC84_0845) 912382..912609 - 228 WP_011922441.1 hypothetical protein -
SSUSC84_RS04515 (SSUSC84_0846) 912663..913739 - 1077 WP_011922442.1 toprim domain-containing protein -
SSUSC84_RS04520 (SSUSC84_0847) 913778..914416 - 639 WP_011922443.1 hypothetical protein -
SSUSC84_RS04525 (SSUSC84_0849) 915817..916416 - 600 WP_011922444.1 response regulator transcription factor -
SSUSC84_RS04530 (SSUSC84_0850) 916394..917902 - 1509 WP_012028145.1 ATP-binding protein -
SSUSC84_RS04535 (SSUSC84_0852) 917906..918595 - 690 WP_012775116.1 ABC transporter permease -
SSUSC84_RS04540 (SSUSC84_0853) 918605..919324 - 720 WP_012028147.1 ABC transporter permease -
SSUSC84_RS04545 (SSUSC84_0854) 919302..920216 - 915 WP_011922447.1 Bacitracin transport ATP-binding protein BcrA VF
SSUSC84_RS04550 (SSUSC84_0855) 920188..922263 - 2076 WP_012028148.1 ATP-binding cassette domain-containing protein -
SSUSC84_RS04555 922269..923381 - 1113 WP_011922450.1 lantibiotic-modifying protein -
SSUSC84_RS10895 923708..923872 + 165 Protein_848 DNA recombinase -
SSUSC84_RS04560 (SSUSC84_0857) 923909..924205 + 297 WP_002360685.1 hypothetical protein -
SSUSC84_RS04565 (SSUSC84_0858) 924206..924622 + 417 WP_000323438.1 hypothetical protein ; Integrase Integrase
SSUSC84_RS04570 (SSUSC84_0859) 924642..926186 + 1545 WP_002390960.1 Tn3 family transposase TnpR_Tn5403 Transposase
SSUSC84_RS04575 (SSUSC84_0860) 926329..926553 + 225 WP_000205227.1 helix-turn-helix transcriptional regulator Antitoxin Detail
SSUSC84_RS04580 (SSUSC84_0861) 926568..927437 + 870 WP_000233000.1 nucleotidyltransferase domain-containing protein Toxin Detail
SSUSC84_RS04585 (SSUSC84_0862) 927418..928152 + 735 WP_000662263.1 class I SAM-dependent methyltransferase -
SSUSC84_RS04590 (SSUSC84_0863) 928185..929048 + 864 WP_002294505.1 Aminoglycoside 6-adenylyltransferase ARG
SSUSC84_RS04595 (SSUSC84_0864) 929092..929619 + 528 WP_002294507.1 adenine phosphoribosyltransferase -
SSUSC84_RS04600 (SSUSC84_0865) 929847..931166 + 1320 WP_002338419.1 IS1380 family transposase ISSsu5 Transposase
SSUSC84_RS04605 931355..932752 - 1398 WP_011922451.1 DUF4135 domain-containing protein -
SSUSC84_RS04610 (SSUSC84_0866) 932836..933009 - 174 WP_012775117.1 type A2 lantipeptide -
SSUSC84_RS04615 (SSUSC84_0868) 933350..933646 - 297 WP_012775118.1 hypothetical protein -
SSUSC84_RS04620 (SSUSC84_0869) 933660..933959 - 300 WP_011922452.1 hypothetical protein -
SSUSC84_RS04625 (SSUSC84_0870) 934030..940854 - 6825 WP_012775119.1 DEAD/DEAH box helicase family protein -
SSUSC84_RS04630 (SSUSC84_0871) 940904..941455 - 552 WP_012775120.1 hypothetical protein -
SSUSC84_RS04635 (SSUSC84_0872) 941439..941630 - 192 WP_011922455.1 calcium-binding protein -
SSUSC84_RS04640 (SSUSC84_0873) 941631..946526 - 4896 WP_012775121.1 hypothetical protein VF
SSUSC84_RS04645 (SSUSC84_0874) 946698..947288 + 591 WP_011922457.1 transcriptional regulator Antitoxin Detail
SSUSC84_RS04650 (SSUSC84_0875) 947285..948130 + 846 WP_011922458.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin Detail
SSUSC84_RS04655 (SSUSC84_0876) 948193..950994 - 2802 WP_011922459.1 CHAP domain-containing protein -
SSUSC84_RS04660 (SSUSC84_0877) 950996..953347 - 2352 WP_011922460.1 ATPase AAA -
SSUSC84_RS04665 (SSUSC84_0878) 953304..953657 - 354 WP_012775123.1 PrgI family protein -
SSUSC84_RS04670 (SSUSC84_0879) 953719..954573 - 855 WP_011922462.1 conjugal transfer protein TrbL -
SSUSC84_RS04675 (SSUSC84_0880) 954592..954834 - 243 WP_001072182.1 hypothetical protein -
SSUSC84_RS04680 (SSUSC84_0881) 954852..956669 - 1818 WP_011922464.1 type IV secretory system conjugative DNA transfer family protein -
SSUSC84_RS04685 (SSUSC84_0882) 956669..957157 - 489 WP_012775124.1 hypothetical protein -
SSUSC84_RS04690 (SSUSC84_0883) 957235..957819 - 585 WP_012775125.1 CPBP family intramembrane metalloprotease -
SSUSC84_RS04695 (SSUSC84_0884) 957822..958055 - 234 WP_001005708.1 hypothetical protein -
SSUSC84_RS04700 (SSUSC84_0885) 958064..958447 - 384 WP_012775126.1 hypothetical protein -
SSUSC84_RS04705 (SSUSC84_0886) 958458..958886 - 429 WP_011922469.1 hypothetical protein -
SSUSC84_RS04710 (SSUSC84_0887) 958870..960225 - 1356 WP_011922470.1 DNA (cytosine-5-)-methyltransferase -
SSUSC84_RS04715 (SSUSC84_0889) 960374..961192 - 819 WP_011922472.1 replication initiator protein A -
SSUSC84_RS10855 (SSUSC84_0890) 961189..961362 - 174 WP_012775127.1 hypothetical protein -
SSUSC84_RS04725 (SSUSC84_0891) 961561..961926 - 366 WP_002936483.1 50S ribosomal protein L7/L12 -
SSUSC84_RS04730 (SSUSC84_0892) 961992..962486 - 495 WP_002936486.1 50S ribosomal protein L10 -
SSUSC84_RS04735 (SSUSC84_0893) 963063..965156 - 2094 WP_012775128.1 type I DNA topoisomerase -
SSUSC84_RS04740 (SSUSC84_0894) 965249..966091 - 843 WP_012775129.1 DNA-processing protein DprA -
SSUSC84_RS04745 (SSUSC84_0895) 966150..966707 - 558 WP_011922479.1 sugar O-acetyltransferase -
SSUSC84_RS04750 (SSUSC84_0896) 966718..966978 - 261 WP_009909865.1 metal-sensitive transcriptional regulator -
SSUSC84_RS04755 (SSUSC84_0897) 967085..967408 + 324 WP_012775130.1 rhodanese-like domain-containing protein -
SSUSC84_RS04760 (SSUSC84_0898) 967405..969063 + 1659 WP_011922481.1 FAD-dependent oxidoreductase -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance
Streptococcus suis strain ZY05719 isolate diseased pig Integrative and Conjugative Element TA10053, TA46533, TA46534, TA46536 NZ_CP007497 808718..964358 0
Streptococcus suis strain SS2-1 Integrative and Conjugative Element TA70792, TA70793, TA70794, TA70795 NZ_CP018908 785098..940739 0
Streptococcus suis strain SC19 Integrative and Conjugative Element TA75581, TA75582, TA75583, TA75584 NZ_CP020863 808893..964533 0
Streptococcus suis strain ZY05719 isolate diseased pig Integrative and Conjugative Element TA10053, TA46533, TA46534, TA46536 NZ_CP007497 808718..964358 0