Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00221  |
| T6SS type | Type i2 |
| Strain | Yersinia pseudotuberculosis IP 31758 |
| Replicon (RefSeq) | chromosome (NC_009708) |
| Location | 887643..899301 |
| Function | - |
| Comment | - |
| References | - |
Bioinformatics investigation has been performed.T6SS components and genome coordinates
| Component | TagL | TssB | TssC | TssD | TssH | TssI | TssK | TssL |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| YPSIP31758_RS04970 | 883884..884534 | + | 651 | WP_002215902.1 | CPBP family intramembrane metalloprotease | ||
| YPSIP31758_RS04975 | 884985..885380 | + | 396 | WP_012104581.1 | hypothetical protein | ||
| YPSIP31758_RS04980 | 885448..885789 | + | 342 | pseudogene | IS1 family transposase | ||
| YPSIP31758_RS24285 | 886282..886437 | + | 156 | WP_012303633.1 | hypothetical protein | ||
| T6CP002204 | TssB | YPSIP31758_RS04995 (tssB) | 887643..888143 | + | 501 | WP_002211662.1 | type VI secretion system contractile sheath small subunit |
| T6CP002205 | TssC | YPSIP31758_RS05000 (tssC) | 888186..889736 | + | 1551 | WP_012104583.1 | type VI secretion system contractile sheath large subunit |
| T6CP002206 | TssK | YPSIP31758_RS05005 (tssK) | 889748..891100 | + | 1353 | WP_012104584.1 | type VI secretion system baseplate subunit TssK |
| T6CP009302 | TssL | YPSIP31758_RS05010 (tssL) | 891097..891783 | + | 687 | WP_012104585.1 | type VI secretion system protein TssL, short form |
| T6CP011605 | TagL | YPSIP31758_RS05015 | 891783..893519 | + | 1737 | WP_012104586.1 | OmpA family protein |
| T6CP009356 | TssD | YPSIP31758_RS05020 | 893523..894014 | + | 492 | WP_002210014.1 | Hcp family type VI secretion system effector |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
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Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||