Detailed information of component protein


Summary

Component ID T6CP011605
Component protein type TagL
T6SS ID (Type) T6SS00221 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (579 a.a.); Nucleotide sequence (1737 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS05015
Coordinate (Strand) 891783..893519 (+)
NCBI ID WP_012104586.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
OmpA PF00691.22 2.1e-15 447..543
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-8 MSRWWQRG
Transmembrane helix 9-31 LWLWAGLLAVILCLAFLPLSPWG
Outside 32-578 RWLMLAWVVLICMLGGSRAGRQAAGASSDPLFAGLATENGLLPENSRLPVVLVCGDGLASWFGRERSHQSAQGCWLRVDDISTLRQFARQLLWQRPEWAAQLAVMMVVNPQQRRDERLLAADLQELRWQLMQLRRDSRHPVPLLLSSTVATSVARDTVWLSQQQTPPLTLWSTVSTPGSLADWQRAESRAVQAERLKQAVLFSSQHDWLNAQVLPVLQAPNADVDPLAPQQIIQQQVASLADPVPASLWQHWLAAHTTLTQVAGWHPPPPAAHDALPLPDFVFSALPLGSGVSSRRRVLRHGVTLLTLAAMVALCSSAWQNRQLLHRVAFDIRQYHSVAMTDYSPKAQAVAVLRRDAGLLDEGYRNGEPLRLGLGLYRGERLRPPLLAAIKSYIPPPPPPPAPPAPKTVRLDSLSLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVVAGHTDITGDAQANHILSLKRAEALRDWMLSTSDVSPTCFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQADACQVPDVKTASQDESDVSTQEMEK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9214 - -


  Protein sequence: 579 a.a.    

>T6CP011605 NC_009708:891783-893519 [Yersinia pseudotuberculosis IP 31758] [TagL]
MSRWWQRGLWLWAGLLAVILCLAFLPLSPWGRWLMLAWVVLICMLGGSRAGRQAAGASSDPLFAGLATENGLLPENSRLP
VVLVCGDGLASWFGRERSHQSAQGCWLRVDDISTLRQFARQLLWQRPEWAAQLAVMMVVNPQQRRDERLLAADLQELRWQ
LMQLRRDSRHPVPLLLSSTVATSVARDTVWLSQQQTPPLTLWSTVSTPGSLADWQRAESRAVQAERLKQAVLFSSQHDWL
NAQVLPVLQAPNADVDPLAPQQIIQQQVASLADPVPASLWQHWLAAHTTLTQVAGWHPPPPAAHDALPLPDFVFSALPLG
SGVSSRRRVLRHGVTLLTLAAMVALCSSAWQNRQLLHRVAFDIRQYHSVAMTDYSPKAQAVAVLRRDAGLLDEGYRNGEP
LRLGLGLYRGERLRPPLLAAIKSYIPPPPPPPAPPAPKTVRLDSLSLFDVGKFTLNAGSTKMLVTALIDIKAKPGWLIVV
AGHTDITGDAQANHILSLKRAEALRDWMLSTSDVSPTCFAVQGYGATRPIADNDTPDGRALNRRVEISLVPQADACQVPD
VKTASQDESDVSTQEMEK*

  Nucleotide sequence: 1737 bp    

>T6CP011605 NC_009708:891783-893519 [Yersinia pseudotuberculosis IP 31758] [TagL]
ATGAGTCGGTGGTGGCAACGTGGGTTGTGGCTCTGGGCGGGTTTGCTGGCGGTCATCTTGTGTCTGGCATTTCTGCCGCT
CTCCCCGTGGGGGCGCTGGCTGATGCTGGCATGGGTGGTGCTGATTTGCATGTTGGGCGGGTCGCGGGCAGGGCGGCAAG
CGGCCGGTGCATCCTCTGATCCGCTGTTCGCCGGGTTGGCAACTGAAAACGGTCTTCTGCCTGAAAACAGTCGCTTACCG
GTGGTGTTGGTGTGTGGTGATGGTCTGGCGTCATGGTTTGGTCGCGAACGGTCACACCAGAGTGCACAGGGCTGCTGGCT
GCGGGTGGATGATATCAGCACCCTGCGGCAGTTTGCCCGACAACTGCTGTGGCAACGGCCGGAATGGGCCGCTCAGTTGG
CGGTGATGATGGTCGTGAACCCGCAGCAACGCCGCGATGAGCGCCTGCTGGCCGCCGATCTGCAAGAGCTGCGCTGGCAA
CTGATGCAACTGCGCCGCGATAGCCGCCATCCTGTTCCCTTGCTCCTGAGCAGCACGGTGGCCACCTCGGTTGCCCGTGA
TACGGTCTGGCTGTCACAGCAGCAGACACCGCCGCTGACACTCTGGTCAACCGTCTCGACGCCGGGCTCTCTGGCCGACT
GGCAGCGTGCGGAAAGCCGTGCCGTACAGGCTGAACGACTGAAACAGGCGGTGCTGTTCAGCAGCCAGCATGACTGGCTG
AACGCACAGGTGCTGCCGGTATTGCAGGCACCCAATGCGGATGTTGACCCCCTTGCCCCGCAACAGATTATTCAACAGCA
GGTTGCCAGTCTGGCCGATCCGGTGCCTGCCTCGCTGTGGCAGCACTGGCTGGCGGCGCATACCACGCTGACACAGGTGG
CGGGTTGGCATCCACCGCCGCCCGCCGCCCATGACGCCTTACCGCTGCCGGATTTTGTCTTTTCAGCGCTTCCTCTTGGT
AGCGGGGTGTCGTCACGCCGTCGGGTACTGCGCCATGGTGTCACCTTACTGACGTTGGCGGCGATGGTGGCGTTGTGCAG
CAGCGCCTGGCAGAACCGGCAACTGTTGCACCGGGTGGCCTTTGATATCCGTCAGTACCACAGCGTGGCGATGACGGATT
ATTCCCCGAAAGCGCAGGCGGTGGCGGTATTACGCCGTGATGCGGGGCTGCTTGATGAAGGGTACCGCAACGGTGAACCG
CTGCGTCTGGGCCTGGGGTTATATCGGGGGGAGCGGCTGCGCCCGCCGCTGTTGGCGGCGATCAAAAGCTACATCCCGCC
CCCTCCGCCCCCTCCCGCGCCACCGGCGCCGAAAACCGTGCGCCTCGACAGCCTGTCACTGTTCGATGTGGGTAAATTCA
CGCTGAATGCGGGGTCCACCAAAATGCTGGTCACGGCGCTGATCGACATCAAAGCCAAACCCGGCTGGCTGATCGTGGTG
GCCGGGCATACCGACATCACCGGCGATGCGCAGGCCAACCACATTCTGTCGCTTAAGCGCGCCGAAGCATTACGCGACTG
GATGCTGTCAACCAGCGACGTCTCGCCGACCTGCTTTGCGGTGCAAGGTTACGGGGCCACACGCCCTATCGCCGACAACG
ATACTCCCGACGGTCGGGCGCTCAACCGCCGGGTCGAAATCAGTCTGGTACCACAGGCTGATGCCTGTCAGGTGCCGGAT
GTAAAAACAGCGTCACAGGATGAAAGTGACGTATCAACGCAAGAAATGGAGAAGTAA