Detailed information of component protein


Summary

Component ID T6CP002208
Component protein type TssI
T6SS ID (Type) T6SS00221 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (783 a.a.); Nucleotide sequence (2349 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS05030
Coordinate (Strand) 896953..899301 (+)
NCBI ID WP_012104588.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 6.5e-61 34..355
DUF2345 PF10106.11 4.3e-51 611..751
T6SS_Vgr PF13296.8 7.7e-34 492..592
Phage_base_V PF04717.14 1.2e-09 406..472
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-782 MNTTLPTLRFDHSHHKLVVRDSTAAVDVLGFEGHESLSQPFCYDIQFTSADKAIDPATMLMQDASLTLAAPVAEAFGVTVQQTQRVIQGVVTGFKRLSASKEECRYELSLQPRLALLSRSHQNGIYQDMSVPQIVEKILRERHDMRGQDFVFTLAREYPRREQVMQYGEDDLTFIRRLLAEVGIWFRFTADPKLNIDVVEFYDDQRFYQQGLTLQAVPPSGMHDSGMESVWDLSSAHQVVEKSVSTGDYNYRTATADMTAGADITRGDTTTYGEAYHYADNYLTAGSEGREPESESGAFYARLRHERYLNNQARFAGVANAAALSPGQELKVTGNDVPAQFGKGVIVTRITSHARRDRSYEVHFEAIPYSEEYCFRPILINKPKMAGTLPARVTSTTANDTYGHIDKDGRYRVNLMFDRDSWEPGYESLWVRQARPYAGDTYGLHLPLLAGTEVAIAFENGNPDRPYIAYVLHDSAHGDHVTISNYKRNVLRTPSNNKLRLEDERGKEHIKLSTEYGGKSQLNLGHLVDNEKQPRGEGFELRTDSFGALRAERGIFISADGQAKAQGQVLEMQPAIGLLQGAQEQMEAISADAQTATASPADLQAQISLLQQNLNELKQAVVLLSAPKGIALSSGEHLQLSASENLIATAGKNADISVGKNFFIGVGNTLSVFVRKLGIKLIANQGAITVQAQNDLMELLARKAITITSTEDEIKITAKKKITLNAGGSYITLDENRIESGTAGEYLTKAGYYGRQEKANKPEDFPSVAPETTEPTSHFTFS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9883 - -


  Protein sequence: 783 a.a.    

>T6CP002208 NC_009708:896953-899301 [Yersinia pseudotuberculosis IP 31758] [TssI]
MNTTLPTLRFDHSHHKLVVRDSTAAVDVLGFEGHESLSQPFCYDIQFTSADKAIDPATMLMQDASLTLAAPVAEAFGVTV
QQTQRVIQGVVTGFKRLSASKEECRYELSLQPRLALLSRSHQNGIYQDMSVPQIVEKILRERHDMRGQDFVFTLAREYPR
REQVMQYGEDDLTFIRRLLAEVGIWFRFTADPKLNIDVVEFYDDQRFYQQGLTLQAVPPSGMHDSGMESVWDLSSAHQVV
EKSVSTGDYNYRTATADMTAGADITRGDTTTYGEAYHYADNYLTAGSEGREPESESGAFYARLRHERYLNNQARFAGVAN
AAALSPGQELKVTGNDVPAQFGKGVIVTRITSHARRDRSYEVHFEAIPYSEEYCFRPILINKPKMAGTLPARVTSTTAND
TYGHIDKDGRYRVNLMFDRDSWEPGYESLWVRQARPYAGDTYGLHLPLLAGTEVAIAFENGNPDRPYIAYVLHDSAHGDH
VTISNYKRNVLRTPSNNKLRLEDERGKEHIKLSTEYGGKSQLNLGHLVDNEKQPRGEGFELRTDSFGALRAERGIFISAD
GQAKAQGQVLEMQPAIGLLQGAQEQMEAISADAQTATASPADLQAQISLLQQNLNELKQAVVLLSAPKGIALSSGEHLQL
SASENLIATAGKNADISVGKNFFIGVGNTLSVFVRKLGIKLIANQGAITVQAQNDLMELLARKAITITSTEDEIKITAKK
KITLNAGGSYITLDENRIESGTAGEYLTKAGYYGRQEKANKPEDFPSVAPETTEPTSHFTFS*

  Nucleotide sequence: 2349 bp    

>T6CP002208 NC_009708:896953-899301 [Yersinia pseudotuberculosis IP 31758] [TssI]
ATGAATACCACTCTCCCGACTCTTCGGTTTGACCATAGCCACCACAAACTGGTGGTCCGCGACAGCACCGCCGCCGTTGA
TGTGTTGGGCTTTGAAGGCCACGAAAGCCTGAGCCAGCCGTTCTGTTACGACATCCAATTCACCAGCGCCGACAAGGCGA
TTGACCCGGCCACCATGCTGATGCAGGACGCGTCACTGACATTGGCGGCCCCGGTGGCCGAAGCTTTTGGCGTGACGGTT
CAGCAGACCCAGCGAGTGATCCAAGGGGTGGTCACCGGATTTAAACGCCTGTCGGCCTCGAAAGAGGAATGCCGCTACGA
ACTGAGCCTGCAACCGCGCCTGGCCTTGTTGTCGCGCAGCCATCAGAACGGGATATATCAGGACATGTCGGTGCCGCAGA
TTGTGGAAAAAATTCTGCGTGAGCGCCATGACATGCGCGGTCAGGATTTTGTCTTCACGCTGGCCCGCGAGTACCCACGC
CGCGAGCAGGTAATGCAATACGGCGAGGATGACCTGACCTTTATCCGCCGCCTGCTGGCCGAGGTGGGGATCTGGTTTCG
TTTTACCGCCGATCCCAAACTCAATATTGATGTGGTGGAGTTTTACGACGACCAGCGCTTCTATCAGCAAGGACTGACGC
TACAGGCGGTGCCGCCTTCGGGGATGCACGACAGCGGGATGGAGTCGGTCTGGGACTTGTCCAGTGCTCATCAGGTGGTT
GAAAAATCGGTCAGTACCGGCGATTACAACTACCGCACCGCGACTGCCGATATGACGGCCGGGGCAGACATCACTCGGGG
TGATACCACCACCTACGGCGAAGCTTATCATTACGCCGATAACTACCTGACCGCAGGCAGTGAAGGGCGCGAGCCGGAAA
GTGAAAGCGGGGCCTTTTATGCCCGTCTGCGCCATGAACGTTACCTCAATAATCAGGCGCGCTTCGCCGGGGTGGCCAAT
GCGGCGGCACTGTCACCGGGTCAGGAACTGAAAGTCACCGGCAACGACGTGCCAGCACAGTTTGGTAAAGGGGTGATAGT
CACCCGCATCACCAGCCACGCCCGCCGCGACCGCAGCTATGAAGTGCATTTTGAGGCCATCCCTTACTCCGAAGAGTATT
GCTTCCGCCCGATCCTCATCAACAAGCCAAAAATGGCTGGCACCTTGCCCGCACGGGTCACCAGCACCACCGCGAATGAC
ACCTACGGACACATCGACAAAGACGGCCGCTACCGTGTCAATCTGATGTTCGACCGGGACAGTTGGGAGCCGGGTTACGA
GAGCCTGTGGGTCCGTCAGGCCCGGCCATATGCGGGTGACACCTACGGCCTGCACCTGCCGCTGCTGGCCGGTACCGAAG
TGGCGATTGCATTTGAAAACGGCAACCCGGACCGGCCGTATATCGCCTATGTGCTGCACGACTCGGCGCACGGCGACCAT
GTCACCATCAGCAACTACAAACGCAACGTACTGCGCACTCCGTCGAACAACAAACTGCGCCTGGAGGATGAACGGGGTAA
AGAGCACATCAAGCTCAGCACCGAATATGGCGGCAAAAGCCAACTGAATCTGGGGCATTTGGTTGATAACGAGAAACAGC
CTCGGGGTGAGGGTTTTGAGCTGCGCACCGACAGTTTTGGTGCATTGCGGGCAGAAAGGGGCATTTTTATCAGTGCCGAC
GGCCAGGCGAAGGCACAGGGGCAGGTGCTGGAGATGCAACCGGCTATTGGCCTGTTGCAAGGTGCTCAGGAACAGATGGA
GGCCATCTCCGCGGATGCACAAACCGCCACCGCCAGTCCGGCCGACCTGCAGGCACAAATCAGTTTGTTACAGCAAAATC
TGAACGAGCTGAAACAGGCGGTGGTATTGCTGAGTGCGCCCAAAGGCATCGCCCTGAGCAGTGGTGAGCATTTACAACTG
TCGGCCAGCGAAAATCTGATAGCCACTGCCGGTAAGAATGCGGATATCAGTGTAGGTAAGAATTTTTTTATCGGTGTGGG
CAACACGCTGAGCGTATTTGTACGCAAGCTGGGGATAAAGTTGATAGCGAATCAGGGAGCAATAACGGTACAGGCCCAGA
ATGATCTGATGGAGTTATTGGCGCGTAAAGCGATCACGATCACCAGCACCGAGGATGAGATAAAAATCACCGCCAAGAAG
AAGATAACGCTAAATGCAGGCGGCAGTTATATCACGCTGGATGAGAATCGGATCGAGTCAGGAACGGCGGGGGAATATTT
GACCAAAGCAGGGTATTACGGGCGACAGGAAAAGGCAAATAAACCAGAAGATTTTCCGAGTGTTGCCCCGGAAACAACAG
AACCCACCAGTCATTTCACTTTTTCCTGA