Detailed information of component protein


Summary

Component ID T6CP002206
Component protein type TssK
T6SS ID (Type) T6SS00221 insolico (Type i2)
Strain Yersinia pseudotuberculosis IP 31758
Replicon chromosome
Sequence Protein sequence (451 a.a.); Nucleotide sequence (1353 bp)
Reference
-
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) YPSIP31758_RS05005
Coordinate (Strand) 889748..891100 (+)
NCBI ID WP_012104584.1
RefSeq NC_009708
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 2.2e-136 18..447
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-450 MKIERPLWARGILVSPQQFQQQASWEAWTNECIAQMAVMHPWGVLQAVFEPDALAQGRLKAARLHVRFPDGVLVDTECADVLPPTLTLAASLPAEASDATVMLAIPQLYANGGNCLQPDERGERPVRHRQAWRDVQNQFGDDKKQVAVMHHQLTLRLDTQENGDYQVCPVARLLRDAQGRWTLDPGFIPPMLSLQASAWCGEQLELLMVQLRARLQRLMGMRRESNARMADFAVADVSLFWLLNALNSAEPVLGNFQRYPQIHPERLYQELARLAGSLLTFSLEHEVTAIPVYQHEQLTRVFPPLFALLNILLEASLPSRVVAIELVHEPRINQWRATLRDPRLREGADFYLSVRSSLPAAQLQTQFPQLCKAGAPDEVGNVVNVALSGIPLRPLSHVPAAIPLRLENQYFSLDLSHPAATQMMETGACVFYVPGTLGEIQLELFAVLRA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9792 - -


  Protein sequence: 451 a.a.    

>T6CP002206 NC_009708:889748-891100 [Yersinia pseudotuberculosis IP 31758] [TssK]
MKIERPLWARGILVSPQQFQQQASWEAWTNECIAQMAVMHPWGVLQAVFEPDALAQGRLKAARLHVRFPDGVLVDTECAD
VLPPTLTLAASLPAEASDATVMLAIPQLYANGGNCLQPDERGERPVRHRQAWRDVQNQFGDDKKQVAVMHHQLTLRLDTQ
ENGDYQVCPVARLLRDAQGRWTLDPGFIPPMLSLQASAWCGEQLELLMVQLRARLQRLMGMRRESNARMADFAVADVSLF
WLLNALNSAEPVLGNFQRYPQIHPERLYQELARLAGSLLTFSLEHEVTAIPVYQHEQLTRVFPPLFALLNILLEASLPSR
VVAIELVHEPRINQWRATLRDPRLREGADFYLSVRSSLPAAQLQTQFPQLCKAGAPDEVGNVVNVALSGIPLRPLSHVPA
AIPLRLENQYFSLDLSHPAATQMMETGACVFYVPGTLGEIQLELFAVLRA*

  Nucleotide sequence: 1353 bp    

>T6CP002206 NC_009708:889748-891100 [Yersinia pseudotuberculosis IP 31758] [TssK]
ATGAAAATTGAACGCCCTCTGTGGGCTCGCGGGATCCTGGTGTCTCCGCAACAATTTCAACAACAGGCTTCCTGGGAGGC
CTGGACCAATGAATGCATTGCGCAAATGGCCGTGATGCATCCCTGGGGCGTGCTTCAGGCTGTTTTCGAGCCGGATGCGC
TGGCACAGGGCCGCCTGAAAGCGGCGCGTCTGCATGTGCGTTTTCCGGACGGTGTGCTGGTGGATACCGAGTGTGCTGAT
GTGCTGCCGCCCACGCTGACGCTGGCAGCCAGTCTGCCCGCCGAGGCCAGCGACGCCACGGTGATGCTGGCGATACCACA
ACTGTATGCCAATGGCGGTAACTGCCTGCAGCCGGATGAGCGGGGCGAACGCCCGGTACGCCATCGTCAGGCCTGGCGCG
ATGTCCAAAATCAGTTCGGCGATGACAAAAAGCAGGTCGCGGTGATGCACCACCAACTGACCCTGCGGCTGGACACTCAG
GAAAACGGCGATTATCAGGTCTGCCCGGTGGCGCGCTTGCTGCGGGATGCGCAAGGTCGCTGGACACTGGATCCGGGCTT
TATTCCGCCGATGCTGAGCCTGCAGGCCAGTGCCTGGTGTGGCGAACAGCTTGAGTTATTGATGGTGCAACTGCGGGCGC
GTTTGCAGCGTCTGATGGGGATGCGCCGGGAGAGCAATGCACGGATGGCCGATTTTGCTGTTGCGGATGTGTCGCTGTTC
TGGCTGCTCAATGCCCTTAACAGTGCCGAACCGGTATTGGGGAATTTTCAGCGCTATCCGCAGATCCACCCGGAACGGCT
GTATCAGGAACTGGCCAGGCTGGCGGGCAGCCTGCTGACGTTCTCCCTTGAGCACGAAGTGACGGCGATCCCGGTTTATC
AGCATGAACAACTGACCCGCGTCTTTCCCCCGTTGTTTGCCCTGCTGAATATTCTGCTGGAAGCCAGCCTCCCTTCACGG
GTAGTGGCGATTGAGCTGGTTCATGAACCGCGTATCAATCAGTGGCGCGCGACCCTGCGTGACCCTCGTCTGCGCGAAGG
GGCCGATTTCTACCTGTCGGTCCGTTCCTCGTTGCCCGCGGCCCAATTGCAGACTCAGTTCCCGCAGTTGTGTAAAGCCG
GTGCGCCAGATGAGGTCGGTAACGTGGTGAATGTTGCGCTGAGTGGCATCCCACTGCGTCCACTCAGCCATGTCCCTGCC
GCCATCCCCTTGCGGCTGGAAAACCAGTACTTCTCCCTTGATCTCAGCCACCCTGCGGCGACGCAGATGATGGAGACGGG
GGCCTGTGTGTTCTATGTACCCGGTACGCTGGGTGAGATCCAACTGGAGCTGTTTGCGGTGCTACGCGCATGA