Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | ABEG07_RS07275 | Genome accession | NZ_CP155636 |
| Coordinates | 1494574..1494888 (+) | Length | 104 a.a. |
| NCBI ID | WP_002459016.1 | Uniprot ID | - |
| Organism | Staphylococcus lugdunensis strain SQ078 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1489574..1499888
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABEG07_RS07245 (ABEG07_07245) | - | 1490366..1490569 (+) | 204 | WP_002459010.1 | YqgQ family protein | - |
| ABEG07_RS07250 (ABEG07_07250) | - | 1490566..1491552 (+) | 987 | WP_002478128.1 | ROK family glucokinase | - |
| ABEG07_RS07255 (ABEG07_07255) | - | 1491552..1491875 (+) | 324 | WP_002459012.1 | MTH1187 family thiamine-binding protein | - |
| ABEG07_RS07260 (ABEG07_07260) | - | 1491879..1492502 (+) | 624 | WP_002459013.1 | MBL fold metallo-hydrolase | - |
| ABEG07_RS07265 (ABEG07_07265) | comGA | 1492549..1493523 (+) | 975 | WP_002478129.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| ABEG07_RS07270 (ABEG07_07270) | comGB | 1493495..1494559 (+) | 1065 | WP_002478130.1 | competence type IV pilus assembly protein ComGB | - |
| ABEG07_RS07275 (ABEG07_07275) | comGC | 1494574..1494888 (+) | 315 | WP_002459016.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| ABEG07_RS07280 (ABEG07_07280) | comGD | 1494821..1495315 (+) | 495 | WP_225306455.1 | competence type IV pilus minor pilin ComGD | - |
| ABEG07_RS07285 (ABEG07_07285) | - | 1495302..1495595 (+) | 294 | WP_002478131.1 | hypothetical protein | - |
| ABEG07_RS07290 (ABEG07_07290) | - | 1496170..1496688 (+) | 519 | WP_002459021.1 | shikimate kinase | - |
| ABEG07_RS07295 (ABEG07_07295) | gcvT | 1496858..1497949 (+) | 1092 | WP_002478133.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| ABEG07_RS07300 (ABEG07_07300) | gcvPA | 1497966..1499315 (+) | 1350 | WP_002478134.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
Sequence
Protein
Download Length: 104 a.a. Molecular weight: 11373.37 Da Isoelectric Point: 8.2727
>NTDB_id=998212 ABEG07_RS07275 WP_002459016.1 1494574..1494888(+) (comGC) [Staphylococcus lugdunensis strain SQ078]
MKFSFYKKCKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHVQSTGCEAQVKMVNSQIEAYTLKHNGSPKSIDDLISEGF
IKDGQKNCKSGETISISNGEAVAN
MKFSFYKKCKAFTLIEMLLVLLIISVLLILIIPNIAKQTAHVQSTGCEAQVKMVNSQIEAYTLKHNGSPKSIDDLISEGF
IKDGQKNCKSGETISISNGEAVAN
Nucleotide
Download Length: 315 bp
>NTDB_id=998212 ABEG07_RS07275 WP_002459016.1 1494574..1494888(+) (comGC) [Staphylococcus lugdunensis strain SQ078]
ATGAAATTTTCTTTTTATAAAAAATGCAAAGCGTTTACACTAATAGAAATGTTATTAGTATTACTAATTATTAGTGTCTT
GCTTATCTTAATTATTCCAAACATTGCCAAACAAACAGCACATGTACAATCAACAGGTTGTGAAGCACAAGTAAAGATGG
TCAATAGCCAAATAGAAGCCTATACTCTAAAGCATAATGGATCTCCAAAAAGCATTGATGATTTAATTTCTGAGGGTTTT
ATTAAAGATGGTCAAAAGAATTGCAAATCTGGGGAAACCATCAGCATATCAAATGGTGAGGCAGTTGCAAATTAA
ATGAAATTTTCTTTTTATAAAAAATGCAAAGCGTTTACACTAATAGAAATGTTATTAGTATTACTAATTATTAGTGTCTT
GCTTATCTTAATTATTCCAAACATTGCCAAACAAACAGCACATGTACAATCAACAGGTTGTGAAGCACAAGTAAAGATGG
TCAATAGCCAAATAGAAGCCTATACTCTAAAGCATAATGGATCTCCAAAAAGCATTGATGATTTAATTTCTGAGGGTTTT
ATTAAAGATGGTCAAAAGAATTGCAAATCTGGGGAAACCATCAGCATATCAAATGGTGAGGCAGTTGCAAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
82.353 |
98.077 |
0.808 |
| comGC | Staphylococcus aureus N315 |
82.353 |
98.077 |
0.808 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
45.918 |
94.231 |
0.433 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.554 |
97.115 |
0.433 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
46.154 |
87.5 |
0.404 |
| comGC/cglC | Streptococcus pneumoniae R6 |
48.235 |
81.731 |
0.394 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
48.235 |
81.731 |
0.394 |
| comGC/cglC | Streptococcus pneumoniae D39 |
48.235 |
81.731 |
0.394 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
50.633 |
75.962 |
0.385 |
| comGC/cglC | Streptococcus mitis SK321 |
51.282 |
75 |
0.385 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
51.282 |
75 |
0.385 |
| comYC | Streptococcus mutans UA140 |
48.75 |
76.923 |
0.375 |
| comYC | Streptococcus mutans UA159 |
48.75 |
76.923 |
0.375 |