Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   EL020_RS02605 Genome accession   NZ_LR134203
Coordinates   517281..518540 (-) Length   419 a.a.
NCBI ID   WP_126402384.1    Uniprot ID   -
Organism   Streptococcus lutetiensis strain NCTC11436     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 512281..523540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL020_RS02575 (NCTC11436_00534) - 512331..513905 (-) 1575 WP_058814325.1 hypothetical protein -
  EL020_RS09995 (NCTC11436_00535) - 513948..514076 (-) 129 WP_260665378.1 hypothetical protein -
  EL020_RS02580 (NCTC11436_00536) - 514202..514519 (-) 318 WP_020917592.1 DUF1292 domain-containing protein -
  EL020_RS02585 (NCTC11436_00537) ruvX 514552..514971 (-) 420 WP_020917593.1 Holliday junction resolvase RuvX -
  EL020_RS02590 (NCTC11436_00538) - 514968..515237 (-) 270 WP_004233510.1 IreB family regulatory phosphoprotein -
  EL020_RS02595 (NCTC11436_00539) spx 515484..515882 (-) 399 WP_004233512.1 transcriptional regulator Spx -
  EL020_RS02600 (NCTC11436_00540) recA 516080..517234 (-) 1155 WP_020917594.1 recombinase RecA -
  EL020_RS02605 (NCTC11436_00541) cinA 517281..518540 (-) 1260 WP_126402384.1 competence/damage-inducible protein A Machinery gene
  EL020_RS02610 (NCTC11436_00542) - 518669..519598 (-) 930 WP_228380499.1 MFS transporter -
  EL020_RS09785 (NCTC11436_00543) - 519624..519851 (-) 228 WP_231997011.1 MFS transporter -
  EL020_RS02615 (NCTC11436_00544) - 520052..520603 (-) 552 WP_043895144.1 DNA-3-methyladenine glycosylase I -
  EL020_RS02620 (NCTC11436_00545) ruvA 520633..521226 (-) 594 WP_020917597.1 Holliday junction branch migration protein RuvA Machinery gene
  EL020_RS02625 (NCTC11436_00546) hexB 521227..523167 (-) 1941 WP_020917598.1 DNA mismatch repair endonuclease MutL Machinery gene

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45910.37 Da        Isoelectric Point: 5.3330

>NTDB_id=998202 EL020_RS02605 WP_126402384.1 517281..518540(-) (cinA) [Streptococcus lutetiensis strain NCTC11436]
MKAEIIAVGTEILTGQITNTNAQFLSEEFAKLGIDVFFQTAVGDNEERLLSIIDLASKRSDLVVLCGGLGPTEDDLTKQT
LAKYLGRNLVFDEQASKRLNEFFATRPQFTRTANNERQAQLIEGSTPLQNSTGLAVGGVIEVDGVTYVVLPGPPSELKPM
VWDYLVPLLSSDHKQLYSRVLRFFGIGESQLVTVLSDLIDNQTDPTIAPYAKIGEVTLRLSTKADDIESAKEKLDQLEQK
ILSKKTLNSIPLENLLYGYGDDNSMARVVFDLLKKKHKTITAAESLTAGLFQSSIADFSGSSSVFNGGFVTYSIEEKSKM
LQIPLEKLQEHGVVSHFTAEKMAEQSRKLTDADFGIGLTGIAGPDSLEGHPAGTVFIGIATREKVHSIRVLIGGRRRSDV
RHIACLYAFNLVRQALLQD

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=998202 EL020_RS02605 WP_126402384.1 517281..518540(-) (cinA) [Streptococcus lutetiensis strain NCTC11436]
ATGAAAGCTGAGATTATCGCTGTAGGAACAGAGATTTTAACAGGACAAATCACAAATACCAATGCGCAATTTTTATCTGA
AGAATTTGCCAAGTTAGGGATTGATGTTTTTTTCCAAACAGCTGTTGGGGACAATGAAGAGCGTCTTTTGTCTATCATTG
ATTTGGCAAGTAAGCGTAGCGATTTAGTTGTTCTCTGTGGTGGTTTAGGACCAACTGAGGATGATTTGACAAAGCAAACC
TTAGCAAAATATTTAGGGCGTAACCTGGTCTTTGATGAACAGGCAAGTAAACGTCTAAATGAGTTCTTTGCGACACGTCC
TCAATTTACAAGAACAGCTAACAATGAACGCCAAGCTCAACTGATTGAAGGTTCAACTCCTTTGCAAAATAGCACTGGTT
TGGCTGTAGGTGGAGTGATTGAAGTTGACGGCGTCACTTATGTTGTTCTTCCTGGCCCACCAAGTGAGCTTAAGCCCATG
GTCTGGGATTATTTAGTGCCTTTGTTATCTAGCGACCATAAGCAACTTTATTCACGTGTTTTGCGTTTCTTTGGCATTGG
AGAAAGCCAACTGGTAACTGTTTTATCAGATTTGATTGACAACCAAACTGATCCAACCATTGCGCCATATGCTAAGATAG
GTGAAGTAACGCTGCGTTTGTCAACGAAAGCAGACGACATTGAATCAGCTAAGGAAAAACTAGACCAGCTAGAGCAAAAA
ATTCTTTCTAAGAAGACTTTAAATAGCATTCCGCTTGAGAATTTGCTTTATGGTTACGGTGATGACAATAGTATGGCGCG
TGTTGTTTTTGATTTGCTTAAGAAAAAACACAAGACCATTACAGCTGCAGAAAGTTTAACAGCAGGGCTATTTCAATCAA
GTATTGCAGACTTCTCAGGCTCTTCATCAGTCTTTAATGGTGGTTTTGTGACTTATAGCATTGAAGAAAAATCAAAAATG
CTTCAGATTCCATTAGAAAAGTTGCAAGAACACGGGGTTGTTAGTCACTTTACAGCTGAGAAAATGGCTGAGCAATCTCG
CAAGTTAACAGATGCTGATTTTGGGATTGGATTGACAGGAATTGCAGGACCAGATAGCTTAGAAGGTCACCCAGCAGGAA
CAGTTTTCATTGGTATTGCTACTAGAGAAAAAGTTCATTCTATTCGTGTTCTCATAGGTGGACGAAGACGTTCAGACGTG
CGTCATATTGCATGTTTGTATGCTTTTAACTTGGTACGTCAAGCTTTATTACAGGATTAA

Domains

Predicted by InterProScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(263-415)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-242)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

71.122

100

0.711
  cinA Streptococcus mutans UA159

71.223

99.523

0.709
  cinA Streptococcus mitis NCTC 12261

70.167

100

0.702
  cinA Streptococcus pneumoniae R6

69.212

100

0.692
  cinA Streptococcus pneumoniae Rx1

69.212

100

0.692
  cinA Streptococcus pneumoniae TIGR4

69.212

100

0.692
  cinA Streptococcus pneumoniae R36A

69.212

100

0.692
  cinA Streptococcus pneumoniae D39

68.974

100

0.69
  cinA Streptococcus suis isolate S10

54.327

99.284

0.539
  cinA Bacillus subtilis subsp. subtilis str. 168

45.498

100

0.458

Multiple sequence alignment