Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AAFX13_RS13990 Genome accession   NZ_CP155084
Coordinates   1137606..1137890 (+) Length   94 a.a.
NCBI ID   WP_021449594.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain TBV028     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1128563..1139150 1137606..1137890 within 0


Gene organization within MGE regions


Location: 1128563..1139150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX13_RS13955 (AAFX13_13950) - 1128581..1128766 (+) 186 WP_017448702.1 hypothetical protein -
  AAFX13_RS13960 (AAFX13_13955) tig 1129060..1130364 (+) 1305 WP_005460612.1 trigger factor -
  AAFX13_RS13965 (AAFX13_13960) clpP 1130470..1131096 (+) 627 WP_005460620.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  AAFX13_RS13970 (AAFX13_13965) clpX 1131168..1132448 (+) 1281 WP_005460618.1 ATP-dependent protease ATP-binding subunit ClpX -
  AAFX13_RS13975 (AAFX13_13970) lon 1132580..1134931 (+) 2352 WP_015296438.1 endopeptidase La -
  AAFX13_RS13980 (AAFX13_13975) - 1135124..1135396 (+) 273 WP_005382341.1 HU family DNA-binding protein -
  AAFX13_RS13985 (AAFX13_13980) ppiD 1135596..1137455 (+) 1860 WP_069507908.1 peptidylprolyl isomerase -
  AAFX13_RS13990 (AAFX13_13985) comEA 1137606..1137890 (+) 285 WP_021449594.1 ComEA family DNA-binding protein Machinery gene
  AAFX13_RS13995 (AAFX13_13990) rrtA 1137981..1138532 (-) 552 WP_069533243.1 rhombosortase -
  AAFX13_RS14000 (AAFX13_13995) - 1138536..1139150 (+) 615 WP_005482520.1 tRNA-uridine aminocarboxypropyltransferase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10249.91 Da        Isoelectric Point: 5.8425

>NTDB_id=996197 AAFX13_RS13990 WP_021449594.1 1137606..1137890(+) (comEA) [Vibrio parahaemolyticus strain TBV028]
MKWILTLCLVVFAPLSLAADTKADKYEGIEITVNINTASAEEIATMLKGIGEKKAQSIVDYRTEHGPFKTAADLTNVKGI
GEATIKKNEDRILL

Nucleotide


Download         Length: 285 bp        

>NTDB_id=996197 AAFX13_RS13990 WP_021449594.1 1137606..1137890(+) (comEA) [Vibrio parahaemolyticus strain TBV028]
ATGAAATGGATTTTAACCTTGTGTTTAGTGGTGTTCGCACCACTCAGTTTGGCCGCTGATACCAAGGCTGATAAATATGA
AGGAATTGAAATTACGGTCAATATCAATACTGCTTCTGCAGAAGAGATAGCAACGATGCTGAAAGGTATTGGCGAAAAGA
AAGCGCAAAGCATAGTTGACTACCGTACCGAGCATGGCCCATTTAAAACAGCAGCTGATTTAACCAATGTAAAAGGAATT
GGTGAAGCAACAATCAAGAAAAACGAAGACCGCATTCTTCTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(32-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

100

100

1
  comEA Vibrio campbellii strain DS40M4

77.895

100

0.787
  comEA Vibrio cholerae C6706

62.766

100

0.628
  comEA Vibrio cholerae strain A1552

62.766

100

0.628
  comEA/comE1 Glaesserella parasuis strain SC1401

56.452

65.957

0.372
  comE1/comEA Haemophilus influenzae Rd KW20

56.452

65.957

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comE Neisseria gonorrhoeae MS11

38.889

95.745

0.372
  comEA Acinetobacter baylyi ADP1

47.222

76.596

0.362

Multiple sequence alignment