Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA/cglA/cilD   Type   Machinery gene
Locus tag   AAYT23_RS09290 Genome accession   NZ_CP154877
Coordinates   1795384..1796325 (-) Length   313 a.a.
NCBI ID   WP_000249571.1    Uniprot ID   A0A0B7M3Q7
Organism   Streptococcus pneumoniae strain 20234295     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1790384..1801325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYT23_RS09250 (AAYT23_09235) comYH 1790870..1791823 (-) 954 WP_000345126.1 class I SAM-dependent methyltransferase Machinery gene
  AAYT23_RS09255 (AAYT23_09240) - 1791884..1792478 (-) 595 Protein_1795 class I SAM-dependent methyltransferase -
  AAYT23_RS09260 (AAYT23_09245) comGG/cglG 1792615..1793028 (-) 414 WP_000265620.1 competence type IV pilus minor pilin ComGG Machinery gene
  AAYT23_RS09265 (AAYT23_09250) comGF/cglF 1793006..1793467 (-) 462 WP_000250540.1 competence type IV pilus minor pilin ComGF Machinery gene
  AAYT23_RS09270 (AAYT23_09255) comGE/cglE 1793430..1793732 (-) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  AAYT23_RS09275 (AAYT23_09260) comGD/cglD 1793695..1794099 (-) 405 WP_000588023.1 competence type IV pilus minor pilin ComGD Machinery gene
  AAYT23_RS09280 (AAYT23_09265) comGC/cglC 1794092..1794418 (-) 327 WP_000738631.1 comG operon protein ComGC Machinery gene
  AAYT23_RS09285 (AAYT23_09270) comGB/cglB 1794420..1795436 (-) 1017 WP_075218762.1 competence type IV pilus assembly protein ComGB Machinery gene
  AAYT23_RS09290 (AAYT23_09275) comGA/cglA/cilD 1795384..1796325 (-) 942 WP_000249571.1 competence type IV pilus ATPase ComGA Machinery gene
  AAYT23_RS09295 (AAYT23_09280) - 1796401..1796766 (-) 366 WP_000286415.1 DUF1033 family protein -
  AAYT23_RS09300 (AAYT23_09285) - 1796917..1797975 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -
  AAYT23_RS09305 (AAYT23_09290) nagA 1798138..1799289 (-) 1152 WP_001134457.1 N-acetylglucosamine-6-phosphate deacetylase -
  AAYT23_RS09310 (AAYT23_09295) - 1799442..1801259 (-) 1818 WP_001220871.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35591.51 Da        Isoelectric Point: 6.0083

>NTDB_id=994486 AAYT23_RS09290 WP_000249571.1 1795384..1796325(-) (comGA/cglA/cilD) [Streptococcus pneumoniae strain 20234295]
MVQEIAQEIIRSARKKGTQDIYFVPKLDAYELHMRVGDERCKIGSYDFEKFAAVISHFKFVAGMNVGEKRRSQLGSCDYA
YDQKMASLRLSTVGDYRGHESLVIRLLHDEEQDLHFWFQDIEELGKQYRQRGLYLFAGPVGSGKTTLMHELSKSLFKGQQ
VMSIEDPVEIKQDDMLQLQLNEAIGLTYENLIKLSLRHRPDLLIIGEIRDSETARAVVRASLTGATVFSTIHAKSIRGVY
ERLLELGVSEEELAVVLQGVCYQRLIGGGGIVDFANRDYQEHQAAKWNEQIDQLLKDGHITSLQAETEKISYS

Nucleotide


Download         Length: 942 bp        

>NTDB_id=994486 AAYT23_RS09290 WP_000249571.1 1795384..1796325(-) (comGA/cglA/cilD) [Streptococcus pneumoniae strain 20234295]
ATGGTTCAAGAAATTGCACAAGAAATCATTCGTTCAGCTCGGAAAAAAGGGACGCAGGATATTTATTTTGTCCCTAAGTT
AGACGCCTATGAGCTTCATATGAGGGTAGGAGACGAGCGCTGTAAAATTGGTAGCTATGATTTTGAAAAGTTTGCAGCCG
TTATCAGTCACTTTAAGTTTGTGGCGGGTATGAATGTGGGAGAAAAAAGACGTAGTCAACTGGGTTCCTGTGATTATGCC
TATGACCAGAAGATGGCGTCTCTACGTTTATCTACTGTAGGCGATTATCGGGGACATGAGAGTTTGGTTATCCGTTTGTT
GCACGATGAGGAGCAGGACTTGCATTTTTGGTTTCAGGATATTGAAGAATTAGGCAAGCAGTACAGGCAACGGGGACTCT
ATCTTTTTGCTGGCCCGGTTGGGAGTGGTAAGACGACCTTGATGCATGAATTGTCCAAGTCACTCTTTAAAGGACAGCAA
GTTATGTCCATCGAAGATCCTGTCGAAATCAAGCAGGACGACATGCTTCAGTTGCAGTTGAACGAAGCAATCGGCCTAAC
CTATGAAAATCTAATCAAACTTTCCTTGCGTCATCGACCAGATCTCTTGATTATCGGAGAAATTCGTGACAGCGAGACGG
CGCGTGCAGTGGTCAGAGCTAGTTTGACAGGTGCGACAGTCTTTTCAACCATTCACGCCAAGAGTATCCGAGGTGTTTAT
GAGCGTCTGCTGGAGTTGGGTGTGAGTGAAGAAGAATTGGCAGTTGTTCTGCAAGGAGTCTGCTACCAGAGATTAATCGG
GGGAGGAGGAATCGTTGACTTTGCAAACAGAGATTATCAAGAACACCAAGCAGCCAAGTGGAATGAGCAAATTGACCAGC
TTCTTAAAGATGGACATATCACAAGTCTTCAGGCTGAGACGGAAAAAATTAGCTACAGCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7M3Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

99.042

100

0.99
  comGA/cglA/cilD Streptococcus pneumoniae D39

99.042

100

0.99
  comGA/cglA/cilD Streptococcus pneumoniae R6

99.042

100

0.99
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

99.042

100

0.99
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

96.805

100

0.968
  comYA Streptococcus gordonii str. Challis substr. CH1

77.742

99.042

0.77
  comYA Streptococcus mutans UA159

65.916

99.361

0.655
  comYA Streptococcus mutans UA140

65.916

99.361

0.655
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

62.581

99.042

0.62
  comGA Lactococcus lactis subsp. cremoris KW2

54.808

99.681

0.546
  comGA Latilactobacillus sakei subsp. sakei 23K

42.642

84.665

0.361

Multiple sequence alignment