Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | V6C35_RS10140 | Genome accession | NZ_CP154863 |
| Coordinates | 2046210..2046680 (-) | Length | 156 a.a. |
| NCBI ID | WP_000934759.1 | Uniprot ID | A0A2I7Y8V1 |
| Organism | Staphylococcus aureus strain BSN31-2 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2017491..2067723 | 2046210..2046680 | within | 0 |
Gene organization within MGE regions
Location: 2017491..2067723
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6C35_RS09935 (V6C35_009935) | scn | 2017491..2017841 (-) | 351 | WP_000702263.1 | complement inhibitor SCIN-A | - |
| V6C35_RS09940 (V6C35_009940) | - | 2018526..2018975 (+) | 450 | WP_000727649.1 | chemotaxis-inhibiting protein CHIPS | - |
| V6C35_RS09945 (V6C35_009945) | - | 2019070..2019405 (-) | 336 | Protein_1923 | SH3 domain-containing protein | - |
| V6C35_RS09950 (V6C35_009950) | sak | 2020055..2020546 (-) | 492 | WP_000919350.1 | staphylokinase | - |
| V6C35_RS09955 (V6C35_009955) | - | 2020737..2021492 (-) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
| V6C35_RS09960 (V6C35_009960) | - | 2021504..2021758 (-) | 255 | WP_000611512.1 | phage holin | - |
| V6C35_RS09965 (V6C35_009965) | - | 2021810..2021917 (+) | 108 | WP_001791821.1 | hypothetical protein | - |
| V6C35_RS09970 (V6C35_009970) | pepG1 | 2021970..2022104 (-) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| V6C35_RS09975 (V6C35_009975) | - | 2022296..2022592 (-) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| V6C35_RS09980 (V6C35_009980) | - | 2022650..2022937 (-) | 288 | WP_001040261.1 | hypothetical protein | - |
| V6C35_RS09985 (V6C35_009985) | - | 2022984..2023136 (-) | 153 | WP_001153681.1 | hypothetical protein | - |
| V6C35_RS09990 (V6C35_009990) | - | 2023126..2026911 (-) | 3786 | WP_000582154.1 | phage tail spike protein | - |
| V6C35_RS09995 (V6C35_009995) | - | 2026927..2028411 (-) | 1485 | WP_000567396.1 | phage tail domain-containing protein | - |
| V6C35_RS10000 (V6C35_010000) | - | 2028408..2032940 (-) | 4533 | WP_334212833.1 | phage tail tape measure protein | - |
| V6C35_RS10005 (V6C35_010005) | - | 2032997..2033134 (-) | 138 | WP_001549167.1 | hypothetical protein | - |
| V6C35_RS10010 (V6C35_010010) | - | 2033185..2033535 (-) | 351 | WP_001096355.1 | hypothetical protein | - |
| V6C35_RS10015 (V6C35_010015) | - | 2033585..2033815 (-) | 231 | Protein_1937 | Ig-like domain-containing protein | - |
| V6C35_RS10020 (V6C35_010020) | - | 2033851..2034495 (-) | 645 | WP_000985142.1 | major tail protein | - |
| V6C35_RS10025 (V6C35_010025) | - | 2034496..2034903 (-) | 408 | WP_000565498.1 | hypothetical protein | - |
| V6C35_RS10030 (V6C35_010030) | - | 2034900..2035304 (-) | 405 | WP_000114341.1 | HK97 gp10 family phage protein | - |
| V6C35_RS10035 (V6C35_010035) | - | 2035301..2035663 (-) | 363 | WP_000755150.1 | head-tail adaptor protein | - |
| V6C35_RS10040 (V6C35_010040) | - | 2035647..2035931 (-) | 285 | WP_000150936.1 | phage head-tail adapter protein | - |
| V6C35_RS10045 (V6C35_010045) | - | 2035921..2036205 (-) | 285 | WP_000238241.1 | hypothetical protein | - |
| V6C35_RS10050 (V6C35_010050) | - | 2036225..2037370 (-) | 1146 | WP_000154568.1 | phage major capsid protein | - |
| V6C35_RS10055 (V6C35_010055) | - | 2037393..2038130 (-) | 738 | WP_000861911.1 | head maturation protease, ClpP-related | - |
| V6C35_RS10060 (V6C35_010060) | - | 2038114..2039277 (-) | 1164 | WP_000025268.1 | phage portal protein | - |
| V6C35_RS10065 (V6C35_010065) | - | 2039293..2040954 (-) | 1662 | WP_000625096.1 | terminase large subunit | - |
| V6C35_RS10070 (V6C35_010070) | - | 2040951..2041295 (-) | 345 | WP_000402904.1 | hypothetical protein | - |
| V6C35_RS10075 (V6C35_010075) | - | 2041426..2041725 (-) | 300 | WP_000988332.1 | HNH endonuclease | - |
| V6C35_RS10080 (V6C35_010080) | - | 2041957..2042373 (-) | 417 | WP_000590122.1 | hypothetical protein | - |
| V6C35_RS10085 (V6C35_010085) | - | 2042401..2042601 (-) | 201 | WP_001557462.1 | DUF1514 family protein | - |
| V6C35_RS10090 (V6C35_010090) | - | 2042601..2042750 (-) | 150 | WP_000595265.1 | transcriptional activator RinB | - |
| V6C35_RS10095 (V6C35_010095) | - | 2042747..2042953 (-) | 207 | WP_000195784.1 | DUF1381 domain-containing protein | - |
| V6C35_RS10100 (V6C35_010100) | - | 2042950..2043195 (-) | 246 | WP_001282077.1 | hypothetical protein | - |
| V6C35_RS10105 (V6C35_010105) | - | 2043232..2043768 (-) | 537 | WP_000185693.1 | dUTPase | - |
| V6C35_RS10110 (V6C35_010110) | - | 2043761..2044009 (-) | 249 | WP_015990315.1 | DUF1024 family protein | - |
| V6C35_RS10115 (V6C35_010115) | - | 2044024..2044266 (-) | 243 | WP_000131370.1 | SAV1978 family virulence-associated passenger protein | - |
| V6C35_RS10120 (V6C35_010120) | - | 2044270..2044638 (-) | 369 | WP_000101288.1 | SA1788 family PVL leukocidin-associated protein | - |
| V6C35_RS10125 (V6C35_010125) | - | 2044651..2045053 (-) | 403 | Protein_1959 | RusA family crossover junction endodeoxyribonuclease | - |
| V6C35_RS10130 (V6C35_010130) | - | 2045062..2045280 (-) | 219 | WP_000338530.1 | hypothetical protein | - |
| V6C35_RS10135 (V6C35_010135) | - | 2045287..2046180 (-) | 894 | WP_049294669.1 | DnaD domain-containing protein | - |
| V6C35_RS10140 (V6C35_010140) | ssbA | 2046210..2046680 (-) | 471 | WP_000934759.1 | single-stranded DNA-binding protein | Machinery gene |
| V6C35_RS10145 (V6C35_010145) | - | 2046681..2047298 (-) | 618 | WP_064135358.1 | MBL fold metallo-hydrolase | - |
| V6C35_RS10150 (V6C35_010150) | - | 2047379..2048299 (-) | 921 | WP_000180600.1 | recombinase RecT | - |
| V6C35_RS10155 (V6C35_010155) | - | 2048301..2050244 (-) | 1944 | WP_000700554.1 | AAA family ATPase | - |
| V6C35_RS10160 (V6C35_010160) | - | 2050253..2050516 (-) | 264 | WP_001205732.1 | hypothetical protein | - |
| V6C35_RS10165 (V6C35_010165) | - | 2050525..2050785 (-) | 261 | WP_000291510.1 | DUF1108 family protein | - |
| V6C35_RS10170 (V6C35_010170) | - | 2050790..2051092 (-) | 303 | WP_000165371.1 | DUF2482 family protein | - |
| V6C35_RS10175 (V6C35_010175) | - | 2051187..2051348 (-) | 162 | WP_000048129.1 | DUF1270 family protein | - |
| V6C35_RS10180 (V6C35_010180) | - | 2051345..2051668 (-) | 324 | WP_001120201.1 | DUF771 domain-containing protein | - |
| V6C35_RS10185 (V6C35_010185) | - | 2051723..2052103 (+) | 381 | WP_000762521.1 | DUF2513 domain-containing protein | - |
| V6C35_RS10190 (V6C35_010190) | - | 2052090..2052287 (-) | 198 | WP_001148862.1 | hypothetical protein | - |
| V6C35_RS10195 (V6C35_010195) | - | 2052303..2053052 (-) | 750 | WP_001148338.1 | phage antirepressor KilAC domain-containing protein | - |
| V6C35_RS10200 (V6C35_010200) | - | 2053109..2053318 (+) | 210 | WP_000772137.1 | hypothetical protein | - |
| V6C35_RS10205 (V6C35_010205) | - | 2053311..2053451 (-) | 141 | WP_000939495.1 | hypothetical protein | - |
| V6C35_RS10210 (V6C35_010210) | - | 2053466..2053909 (-) | 444 | WP_000435360.1 | hypothetical protein | - |
| V6C35_RS10215 (V6C35_010215) | - | 2053922..2054164 (-) | 243 | WP_000639923.1 | DUF739 family protein | - |
| V6C35_RS10220 (V6C35_010220) | - | 2054328..2055044 (+) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| V6C35_RS10225 (V6C35_010225) | - | 2055056..2055910 (+) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| V6C35_RS10230 (V6C35_010230) | - | 2055984..2056130 (+) | 147 | WP_000345949.1 | hypothetical protein | - |
| V6C35_RS10235 (V6C35_010235) | - | 2056127..2056312 (+) | 186 | WP_000109189.1 | hypothetical protein | - |
| V6C35_RS10240 (V6C35_010240) | - | 2056383..2056565 (+) | 183 | WP_000705245.1 | hypothetical protein | - |
| V6C35_RS10245 (V6C35_010245) | - | 2056644..2057357 (+) | 714 | WP_001549185.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| V6C35_RS10250 (V6C35_010250) | - | 2057548..2058585 (+) | 1038 | WP_000857200.1 | site-specific integrase | - |
| V6C35_RS10255 (V6C35_010255) | sph | 2058636..2059466 (+) | 831 | Protein_1985 | sphingomyelin phosphodiesterase | - |
| V6C35_RS10260 (V6C35_010260) | lukG | 2059704..2060720 (-) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| V6C35_RS10265 (V6C35_010265) | lukH | 2060742..2061797 (-) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| V6C35_RS10270 (V6C35_010270) | - | 2062233..2063456 (+) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| V6C35_RS10275 (V6C35_010275) | - | 2063900..2065207 (+) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| V6C35_RS10280 (V6C35_010280) | groL | 2065747..2067363 (-) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| V6C35_RS10285 (V6C35_010285) | groES | 2067439..2067723 (-) | 285 | WP_108720534.1 | co-chaperone GroES | - |
Sequence
Protein
Download Length: 156 a.a. Molecular weight: 17641.52 Da Isoelectric Point: 5.2672
>NTDB_id=994281 V6C35_RS10140 WP_000934759.1 2046210..2046680(-) (ssbA) [Staphylococcus aureus strain BSN31-2]
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
MLNRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVIADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIEIDDNDLPF
Nucleotide
Download Length: 471 bp
>NTDB_id=994281 V6C35_RS10140 WP_000934759.1 2046210..2046680(-) (ssbA) [Staphylococcus aureus strain BSN31-2]
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
ATGCTAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTATTGCTGATAGTATTCAATTTTTAGAACCGAAAAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAAATAGATGACAATGATTTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
55.932 |
100 |
0.635 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50.588 |
100 |
0.551 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
67.949 |
0.404 |
| ssb | Glaesserella parasuis strain SC1401 |
32.203 |
100 |
0.365 |